Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
2.4k
views
Statistics and Bioinformatics Positions, Novartis Molecular Diagnostics, Cambridge MA USA and Basel, Switzerland
Visualization
Visualization
15.1 years ago
A.J. Rossini
▴ 210
0
votes
0
replies
1.2k
views
EdgeR - problems running estimateCRDisp
RNASeq
edgeR
RNASeq
edgeR
15.1 years ago
Davis McCarthy
▴ 260
0
votes
3
replies
1.3k
views
Complete newbie - reconstruct array image with only data file?
Microarray
Microarray
updated 15.1 years ago by
Mark Dunning
★ 1.1k • written 15.1 years ago by
D M
▴ 40
0
votes
2
replies
1.4k
views
Rgraphviz running problem on vista
Cancer
Rgraphviz
Cancer
Rgraphviz
updated 15.1 years ago by
xyang2
▴ 120 • written 15.1 years ago by
Martin Morgan
25k
0
votes
1
reply
897
views
Combining Affymetrix miRNA samples from different arrays
Normalization
cdf
Normalization
cdf
updated 15.1 years ago by
James W. MacDonald
68k • written 15.1 years ago by
Michal Blazejczyk
▴ 320
0
votes
4
replies
4.5k
views
how to combine p values?
updated 15.1 years ago by
Moshe Olshansky
▴ 120 • written 15.1 years ago by
Reema Singh
▴ 570
0
votes
2
replies
2.1k
views
FW: PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation
cdf
probe
affy
oligo
xps
DOSE
Annotation
cdf
probe
affy
oligo
xps
DOSE
updated 15.1 years ago by
branislav misovic
▴ 120 • written 15.1 years ago by
Ramil Nurtdinov
▴ 10
0
votes
1
reply
1.2k
views
ExonMap and xmap package question
probe
limma
convert
exonmap
probe
limma
convert
exonmap
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
967
views
CRLMM calls to forward strand genotypes?
Annotation
convert
crlmm
Annotation
convert
crlmm
15.1 years ago
wrighth
▴ 260
0
votes
0
replies
2.1k
views
interactions of range(flowFrame) with transform, densityplot and splom
Cancer
flowCore
flowViz
Cancer
flowCore
flowViz
15.1 years ago
Mroz, Edmund A.
▴ 10
0
votes
4
replies
1.3k
views
Single channel array, limma and imagene
Microarray
limma
Microarray
limma
updated 15.1 years ago by
James W. MacDonald
68k • written 15.1 years ago by
Carla Zammit
▴ 40
0
votes
4
replies
2.1k
views
RandomForest, supervised machine learning and uncertainty
GO
Classification
GO
Classification
updated 15.1 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.1 years ago by
January Weiner
▴ 370
0
votes
0
replies
784
views
SPL extension
MergeMaid
MergeMaid
15.1 years ago
Lakshmi Kastury
▴ 40
0
votes
2
replies
2.2k
views
PLANdbAffy + Alternative Exon Annotation +XPS, aroma, oligo, RMAExpress
Annotation
cdf
probe
affy
oligo
xps
DOSE
Annotation
cdf
probe
affy
oligo
xps
DOSE
updated 15.1 years ago by
Benilton Carvalho
★ 4.3k • written 15.1 years ago by
branislav misovic
▴ 120
0
votes
2
replies
1.6k
views
How do I set the median when performing MAS5.0 normalization
Normalization
affy
Normalization
affy
updated 15.1 years ago by
Matthew Willmann
▴ 60 • written 15.1 years ago by
James W. MacDonald
68k
0
votes
0
replies
1.1k
views
4 main questions about making complicated model matrix and fitting the model
limma
limma
15.1 years ago
Mingkwan Nipitwattanaphon
▴ 30
0
votes
1
reply
1.7k
views
HTqPCR question
HTqPCR
HTqPCR
updated 15.1 years ago by
Heidi Dvinge
★ 2.0k • written 15.1 years ago by
Simon Melov
▴ 340
0
votes
1
reply
3.3k
views
topGO and Arabidopsis data
Annotation
GO
ath1121501
topGO
Annotation
GO
ath1121501
topGO
updated 15.1 years ago by
Adrian Alexa
▴ 400 • written 15.1 years ago by
Johannes Hanson
▴ 30
0
votes
2
replies
2.0k
views
ChIPpeakAnno makeVennDiagram
updated 15.1 years ago by
Julie Zhu
★ 4.3k • written 15.1 years ago by
Binbin Liu
▴ 30
0
votes
2
replies
897
views
DESeq questions
Normalization
Normalization
updated 15.1 years ago by
Simon Anders
★ 3.8k • written 15.1 years ago by
Shreyartha Mukherjee
▴ 80
0
votes
4
replies
1.5k
views
combineBeadLevelLists() in Bioconductor 2.8 beadarray
beadarray
beadarray
updated 15.1 years ago by
Mark Dunning
★ 1.1k • written 15.1 years ago by
Alex Gutteridge
▴ 650
0
votes
2
replies
1.9k
views
BSgenome package for a. thaliana
BSgenome
BSgenome
BSgenome
BSgenome
updated 15.1 years ago by
Hervé Pagès
16k • written 15.1 years ago by
oleg@stat.berkeley.edu
▴ 20
0
votes
0
replies
932
views
Help for setting up design and contrast matrix
limma
limma
15.1 years ago
John Antonydas Gaspar
▴ 130
0
votes
1
reply
615
views
stop
updated 15.1 years ago by
Marc Carlson
★ 7.2k • written 15.1 years ago by
Daniel M.
▴ 20
0
votes
0
replies
1.1k
views
POE/metaArray error
metaArray
metaArray
15.1 years ago
Sheena Scroggins
▴ 30
0
votes
0
replies
1.4k
views
analysing NimbleGen CGH for CNV
aCGH
probe
aCGH
snapCGH
Ringo
aCGH
probe
aCGH
snapCGH
Ringo
15.1 years ago
Adeolu Adewoye
▴ 40
0
votes
0
replies
1.0k
views
equiry about GAGE
Sequencing
gage
Sequencing
gage
15.1 years ago
Luo Weijun
★ 1.6k
0
votes
4
replies
2.2k
views
miRNA Array from Affymetrix
miRNA
Microarray
cdf
miRNA
Microarray
cdf
updated 15.1 years ago by
Guido Hooiveld
★ 4.1k • written 15.1 years ago by
Claudia Döring
▴ 40
0
votes
2
replies
994
views
How do I set the median when performing MAS5.0 normalization
Normalization
Normalization
updated 15.1 years ago by
James W. MacDonald
68k • written 15.1 years ago by
Matthew Willmann
▴ 60
0
votes
1
reply
1.6k
views
two way anova with interaction effect : limma package
limma
limma
updated 15.1 years ago by
James W. MacDonald
68k • written 15.1 years ago by
John Antonydas Gaspar
▴ 130
0
votes
12
replies
3.5k
views
gProcessed Signal normalization using cyclic loess
Microarray
Normalization
Microarray
Normalization
updated 15.1 years ago by
Martin Morgan
25k • written 15.1 years ago by
viritha kaza
▴ 580
0
votes
0
replies
1.2k
views
how to go from an short read alignment file to a SNPs table for population genetic analysis
convert
genomes
convert
genomes
15.1 years ago
Sean Davis
21k
0
votes
3
replies
1.4k
views
how to go from an short read alignment file to a SNPs table for population genetic analysis
genomes
genomes
updated 15.1 years ago by
Sean Davis
21k • written 15.1 years ago by
Mao Jianfeng
▴ 290
0
votes
6
replies
1.9k
views
ChIPpeakAnno venn diagram statistics
updated 15.1 years ago by
Noah Dowell
▴ 410 • written 15.1 years ago by
Ester Feldmesser
▴ 60
0
votes
1
reply
1.1k
views
problem with beadarray package 2.0
beadarray
beadarray
updated 15.1 years ago by
Tim Triche
★ 4.2k • written 15.1 years ago by
Daniela Albrecht
▴ 10
0
votes
0
replies
870
views
A question about outputting GO annotation
Annotation
GO
ChIPpeakAnno
Annotation
GO
ChIPpeakAnno
15.1 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.9k
views
a workflow of population genomic operations/analysis using bioconductor
Genetics
genomes
Genetics
genomes
updated 15.1 years ago by
Michael Lawrence
★ 11k • written 15.1 years ago by
Mao Jianfeng
▴ 290
0
votes
3
replies
1.2k
views
maping SNPs
updated 15.1 years ago by
Hervé Pagès
16k • written 15.1 years ago by
SimonNoël
▴ 450
0
votes
0
replies
1.1k
views
timecourse: modt1 not found
TimeCourse
limma
timecourse
TimeCourse
limma
timecourse
15.1 years ago
Steve Ladunga
▴ 10
0
votes
0
replies
1.5k
views
Illumina CanineHD CNV & crlmm?
GO
HapMap
cdf
affy
crlmm
GO
HapMap
cdf
affy
crlmm
15.1 years ago
Matthew Ritchie
▴ 1000
0
votes
2
replies
2.6k
views
UCSC rtracklayer error "transfer closed with outstanding read data remaining"
updated 15.1 years ago by
Michael Lawrence
★ 11k • written 15.1 years ago by
Mark Robinson
★ 1.1k
0
votes
2
replies
1.2k
views
rtracklayer issues with other packages?
GO
Cancer
BSgenome
graph
Biostrings
GOstats
BSgenome
rtracklayer
GO
Cancer
BSgenome
updated 15.1 years ago by
Michael Lawrence
★ 11k • written 15.1 years ago by
mattia pelizzola
▴ 200
0
votes
1
reply
1.4k
views
gage package: biological replicates and technical replicates
gage
gage
updated 15.1 years ago by
Luo Weijun
★ 1.6k • written 15.1 years ago by
heyi xiao
▴ 360
0
votes
0
replies
1.4k
views
missing value where TRUE/FALSE needed (metaArray)
metaArray
metaArray
15.1 years ago
Reema Singh
▴ 570
0
votes
0
replies
915
views
Talks (PDFs) from the Bioconductor Developer Meeting Europe in Heidelberg on 2010-11-17/18
15.1 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
2.6k
views
problem installing 'GLAD' package
cdf
GLAD
cdf
GLAD
15.1 years ago
Shenglin Zheng
▴ 20
0
votes
3
replies
1.1k
views
Note on xps and tRMA
updated 15.1 years ago by
Mark Cowley
▴ 910 • written 15.1 years ago by
cstrato
★ 3.9k
0
votes
2
replies
1.5k
views
Problems running oneChannelGUI
probe
oneChannelGUI
probe
oneChannelGUI
updated 15.1 years ago by
Mark Cowley
▴ 910 • written 15.1 years ago by
Marcos Pinho
▴ 200
0
votes
1
reply
1.3k
views
Insert entrez gene ID and gene symbol and name on TopTable for hugene1.0st arrays
hgu133plus2
hgu133plus2
updated 15.1 years ago by
James W. MacDonald
68k • written 15.1 years ago by
Marcos Pinho
▴ 200
0
votes
1
reply
2.1k
views
Help with GSEA package
hu6800
cdf
genefilter
multtest
affy
gcrma
siggenes
annaffy
GSEABase
hu6800
cdf
multtest
updated 15.1 years ago by
Martin Morgan
25k • written 15.1 years ago by
Jillian Rowe
▴ 20
46,726 results • Page
648 of 935
Recent ...
Replies
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Martin Morgan
25k
I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
ATpoint
★ 5.0k
Yes, still it's not reproducible, yet hard to debug. I cannot reproduce myself either.
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…
Answer: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Benjamin
• 0
Still happening in a clean install
Votes
Comment: limpa analysis advice
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Awards
• All
Popular Question
to
Martin Morgan
25k
Teacher
to
Michael Love
43k
Popular Question
to
A
• 0
Popular Question
to
Lluís Revilla Sancho
▴ 760
Popular Question
to
nromerov
• 0
Locations
• All
United States,
12 minutes ago
United States,
12 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
Melbourne, Australia,
1 hour ago
The city by the bay,
2 hours ago
Traffic: 1128 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6