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6
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1.8k
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mapping probe sets from yeast2 array to probe sets in hgu133A
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updated 15.5 years ago by ▴ 60 • written 15.5 years ago by ▴ 350
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4
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package for pathway analysis
updated 15.5 years ago by ★ 13k • written 15.5 years ago by ▴ 10
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SPIA with Mouse Data
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15.5 years ago Will Bush ▴ 10
0
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1
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1.5k
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append on DNAStringSet produces an empty DNAString as last element
updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 20
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6
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4.2k
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Problem with bnlearn and Rgraphviz
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updated 15.5 years ago by 25k • written 15.5 years ago by ▴ 10
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15.5 years ago Yuan Jian ▴ 250
0
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1
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1.0k
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oligo - copying V1Overview vigenette
updated 15.5 years ago by ★ 4.3k • written 15.5 years ago by ▴ 480
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[limma] Separate Channel Analysis of 2 color data with summarization
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15.5 years ago Ana Conesa ▴ 340
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15.5 years ago jorge zamora ▴ 40
0
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2
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801
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genenames in KEGG2heatmap, GO2heatmap
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 10
0
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1
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1.1k
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limma, is there a limited number of levels for a factor?
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 50
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5
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iFlow error in opening FCS and LMD files
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updated 15.5 years ago by ▴ 140 • written 15.5 years ago by ▴ 40
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ChIPpeakAnno - VennDiagram P-value - NaN
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15.5 years ago Julie Zhu ★ 4.3k
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1
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1.5k
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heatplot() 1. red-*black*-green palette, 2.suppress drawing of the row dendrogram (but NOT row reordering)
updated 15.5 years ago by ▴ 420 • written 15.5 years ago by ▴ 80
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1
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1.4k
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Fisher-test
updated 15.5 years ago by ★ 6.0k • written 15.5 years ago by ▴ 70
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Bioconductor Developer Meeting Europe - 17.-18. 11. 2010
15.5 years ago Wolfgang Huber ★ 13k
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6
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heatplot() 1. red-*black*-green palette, 2.suppress drawing of the row dendrogram (but NOT row reordering)
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updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 420
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'plgem' package bug fix
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15.5 years ago Pavelka, Norman ▴ 70
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2
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1.2k
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EBImage not loading
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updated 15.5 years ago by ▴ 30 • written 15.5 years ago by ▴ 310
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1.0k
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browseURL
updated 15.5 years ago by ▴ 370 • written 15.5 years ago by ★ 13k
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entrez gene to genome coordinates
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updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 30
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15.5 years ago Gordon Smyth 53k
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1.2k
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dynamic range/scale using exprs (Biobase)
Biobase affy Biobase affy
updated 15.5 years ago by ★ 2.3k • written 15.5 years ago by ▴ 330
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[R] error with ReadAffy()
15.5 years ago Amos Folarin ▴ 80
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clarification on MULTI SPECIES COMPARISONS filters
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15.5 years ago jorge zamora ▴ 40
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get full variance per gene from DESeq
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updated 15.5 years ago by ▴ 20 • written 15.5 years ago by ★ 13k
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ChIPpeakAnno:write2FASTA, getAllPeakSequence Functions
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15.5 years ago Julie Zhu ★ 4.3k
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loading processed data into eset class
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updated 15.5 years ago by 6.7k • written 15.5 years ago by ▴ 90
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1
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913
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count number of groups containing consecutive numbers
updated 15.5 years ago by ★ 11k • written 15.5 years ago by ▴ 170
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Analysis: two-color, time series
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15.5 years ago Ольга Камнева ▴ 90
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15.5 years ago James W. MacDonald 68k
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HapMap gene list
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updated 15.5 years ago by ★ 6.5k • written 15.5 years ago by ▴ 20
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flowStats Plot quadrantGate Filter Result Smooth=FALSE
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15.5 years ago Chao-Jen Wong ▴ 580
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arrayQualityMetrics and Bioconductor Case Studies
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updated 15.5 years ago by ▴ 310 • written 15.5 years ago by ★ 13k
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15.5 years ago Steve Taylor ▴ 280
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15.5 years ago Gosink, John ▴ 20
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0
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fisher-test
15.5 years ago Noemi Andor ▴ 100
0
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0
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biomaRt problem
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15.5 years ago Wolfgang Huber ★ 13k
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2
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Quality control on Human Affymetrix Exon microarrays
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updated 15.5 years ago by ★ 13k • written 15.5 years ago by ★ 1.9k
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875
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xps: RMA background plot using ROOT graphics
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updated 15.5 years ago by ★ 3.9k • written 15.5 years ago by ★ 1.9k
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How to do GO enrichment analysis with GOstats while the gene set with no p values of gene difference expression
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15.5 years ago zhidong yuan ▴ 10
0
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0
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Bioconductor Digest, Vol 90, Issue 1
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15.5 years ago Amos Folarin ▴ 20
0
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0
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
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15.5 years ago Georg Otto ▴ 120
0
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1
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Agi4x44PreProcess: Replicated Genes and Custom Annotation Database
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updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 40
0
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launch of free R/Bioconductor Cloud Computing web-service
GUI GUI
15.5 years ago hbolouri@caltech.edu ▴ 10
0
votes
1
reply
848
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best match for illumina human WG-1 vs human WG-2?
updated 15.5 years ago by ★ 3.6k • written 15.5 years ago by 6.7k
0
votes
3
replies
1.1k
views
Human Affymetrix Exon microarrays
updated 15.5 years ago by ▴ 30 • written 15.5 years ago by ▴ 190
0
votes
1
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1.3k
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probe ID<-> accession number
probe limma probe limma
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 200
0
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0
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Odd Plotting Behavior with lymphGate flowStats
flowViz flowViz
15.5 years ago Nishant Gopalakrishnan ▴ 340
0
votes
0
replies
997
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DESeq question correlation
DESeq DESeq
15.5 years ago Wolfgang Huber ★ 13k
46,735 results • Page 662 of 935
Recent ...
Replies
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Comment: limpa analysis advice by Gordon Smyth 53k
I prefer for limpa to work on precursor intensities, because my understanding is that precursors are the basic unit of identification and q…
Answer: Confirm that OpenStats will not be archived (pryr dependency) by shepherl 4.3k
As long as OpenStats is building cleanly and all needed stated dependencies are on CRAN or Bioconductor, OpenStats will not be archived. I…
Comment: Lowly expressed genes reported as significant when using lfcThreshold in DESeq by Michael Love 43k
Yes, I find that the LFC shrinkage and its corresponding stat `svalue` if you use lfcShrink with a threshold often returns more reliable ge…
Votes
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Answer: Array weights in dpcDE
Answer: Array weights in dpcDE
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