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0
votes
0
replies
736
views
rtracklayer - getTable
Cancer
rtracklayer
Cancer
rtracklayer
15.7 years ago
Michael Lawrence
★ 11k
0
votes
10
replies
2.7k
views
package pair "hugene10stv1cdf"/"hugene10stprobeset.db"
Annotation
cdf
Annotation
cdf
updated 15.7 years ago by
James W. MacDonald
68k • written 15.7 years ago by
Laurent Gautier
★ 2.3k
0
votes
2
replies
1.1k
views
HTqPCR (plotCtOverview) problem
HTqPCR
HTqPCR
updated 15.7 years ago by
Michael Muratet
▴ 420 • written 15.7 years ago by
Heidi Dvinge
★ 2.0k
0
votes
12
replies
2.7k
views
htqPCR question
miRNA
qPCR
Normalization
limma
miRNA
qPCR
Normalization
limma
updated 15.7 years ago by
Heidi Dvinge
★ 2.0k • written 15.7 years ago by
Andreia Fonseca
▴ 810
0
votes
1
reply
1.0k
views
Validated miRNAs revisited
updated 15.7 years ago by
michael watson IAH-C
★ 3.4k • written 15.7 years ago by
mauede@alice.it
▴ 870
0
votes
1
reply
1.2k
views
arrayQualityMetrics: beutifying the outputs
affy
arrayQualityMetrics
affy
arrayQualityMetrics
updated 15.7 years ago by
Audrey Kauffmann
▴ 110 • written 15.7 years ago by
Sylvain Foisy
▴ 80
0
votes
1
reply
1.4k
views
segfault with rmaMicroRna in AgiMicroRna package
PROcess
AgiMicroRna
PROcess
AgiMicroRna
updated 15.7 years ago by
Seth Falcon
★ 7.4k • written 15.7 years ago by
heyi xiao
▴ 360
0
votes
3
replies
1.6k
views
Annotation of orthologs
Microarray
Microarray
updated 15.7 years ago by
Alexandre Kuhn
▴ 60 • written 15.7 years ago by
Nick Schurch
▴ 60
0
votes
1
reply
702
views
hugene10stv1probe
probe
probe
updated 15.7 years ago by
James W. MacDonald
68k • written 15.7 years ago by
sneha patil
▴ 220
0
votes
1
reply
1.1k
views
rtracklayer - getTable
Cancer
Cancer
updated 15.7 years ago by
Michael Lawrence
★ 11k • written 15.7 years ago by
Li, Xuejun
▴ 10
0
votes
2
replies
1.8k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer
BSgenome
SNPlocs
BSgenome
Cancer
BSgenome
SNPlocs
BSgenome
15.7 years ago
Hervé Pagès
16k
0
votes
3
replies
1.7k
views
ShortRead report function crash in x86_64-apple
GUI
GUI
written 15.7 years ago by
Hugo Naya
▴ 20
0
votes
1
reply
1.0k
views
single channel analysis
Annotation
Normalization
limma
ASSIGN
Annotation
Normalization
limma
ASSIGN
updated 15.7 years ago by
David
▴ 860 • written 15.7 years ago by
boczniak767
▴ 740
0
votes
2
replies
981
views
(no subject)
Microarray
Clustering
Microarray
Clustering
updated 15.7 years ago by
Andreia Fonseca
▴ 810 • written 15.7 years ago by
varpal singh
▴ 120
0
votes
0
replies
1.3k
views
Genominator question
Genominator
Genominator
15.7 years ago
raffaele calogero
▴ 500
0
votes
1
reply
915
views
help: limma and changing gene results!
limma
limma
updated 15.7 years ago by
James W. MacDonald
68k • written 15.7 years ago by
Joseph Skaf
▴ 20
0
votes
0
replies
2.2k
views
How to normalize Illumina bead-level data ?
SNP
Normalization
GO
PROcess
beadarraySNP
SNP
Normalization
GO
PROcess
beadarraySNP
15.7 years ago
Jonas Mandel
▴ 10
0
votes
0
replies
805
views
Ph.D - Help
15.7 years ago
Kalai Vani
▴ 10
0
votes
1
reply
2.2k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
updated 15.7 years ago by
Mª José Nueda
▴ 90 • written 15.7 years ago by
boczniak767
▴ 740
0
votes
1
reply
1.3k
views
Could I use "genefilter" package for MArray data ?
genefilter
limma
marray
genefilter
limma
marray
updated 15.7 years ago by
Wolfgang Huber
★ 13k • written 15.7 years ago by
Xiaokuan Wei
▴ 230
0
votes
3
replies
1.8k
views
beadarray illumina Human610-Quadv1_B.bpm
SNP
Annotation
illuminaHumanv1
beadarray
SNP
Annotation
illuminaHumanv1
beadarray
updated 15.7 years ago by
Mark Dunning
★ 1.1k • written 15.7 years ago by
Nolwenn Le Meur
▴ 80
0
votes
0
replies
1.0k
views
Reading .bpmap files for homemade tiling arrays
rMAT
rMAT
15.7 years ago
Patrick Schorderet
▴ 50
0
votes
1
reply
1.6k
views
pulling functional information for SNPs
SNP
biomaRt
SNP
biomaRt
updated 15.7 years ago by
James W. MacDonald
68k • written 15.7 years ago by
Kay Jaja
▴ 90
0
votes
0
replies
1.5k
views
problem in ReadAffy function (affy and affyio libraries)
affyio
affyio
15.7 years ago
Groot, Philip de
▴ 630
3
votes
2
replies
3.7k
views
edgeR - technical and biological replication
edgeR
edgeR
updated 15.7 years ago by
Gordon Smyth
53k • written 15.7 years ago by
Jakob Hedegaard
▴ 170
0
votes
2
replies
1.4k
views
ShortRead with BAM
ShortRead
ShortRead
updated 15.7 years ago by
James W. MacDonald
68k • written 15.7 years ago by
Duke
▴ 210
0
votes
2
replies
1.2k
views
single channel analysis
Annotation
ASSIGN
Annotation
ASSIGN
updated 15.7 years ago by
James W. MacDonald
68k • written 15.7 years ago by
David
▴ 860
0
votes
0
replies
904
views
Model simplification on microarray data
15.7 years ago
Paolo Innocenti
▴ 320
0
votes
5
replies
1.4k
views
heatmap.2
updated 15.7 years ago by
Sean Davis
21k • written 15.7 years ago by
carol white
▴ 680
0
votes
1
reply
2.0k
views
biomaRt inconsistency: a missing annotation causes a failed query
biomaRt
biomaRt
updated 15.7 years ago by
Steffen
▴ 500 • written 15.7 years ago by
Nenad Bartonicek
▴ 80
0
votes
1
reply
639
views
Help in web browser
updated 15.7 years ago by
James W. MacDonald
68k • written 15.7 years ago by
Chintanu
▴ 310
0
votes
2
replies
3.9k
views
Hmisc 3.7.0
updated 15.7 years ago by
Benilton Carvalho
★ 4.3k • written 15.7 years ago by
Francesco Mancuso
▴ 40
0
votes
4
replies
1.7k
views
Basic question about Limma
limma
limma
updated 15.7 years ago by
Heidi Dvinge
★ 2.0k • written 15.7 years ago by
Guido Leoni
▴ 200
0
votes
7
replies
2.1k
views
rMAT tutorial. Data file too large?
Preprocessing
GUI
rMAT
Preprocessing
GUI
rMAT
15.7 years ago
Patrick Schorderet
▴ 50
0
votes
3
replies
1.6k
views
annotation of affymetrix microarray data
annotate
annaffy
annotate
annaffy
updated 15.7 years ago by
Sean Davis
21k • written 15.7 years ago by
Taylor, Katie
▴ 90
0
votes
6
replies
1.4k
views
CDF for Cytogenetics_Array
cdf
affy
cdf
affy
updated 15.7 years ago by
Wolfgang Huber
★ 13k • written 15.7 years ago by
Lenka Radova
▴ 40
0
votes
0
replies
820
views
Question about the number of human genes annotated in Pathway of REACTOAM in biomaRt
biomaRt
biomaRt
15.7 years ago
Gilbert Feng
▴ 300
0
votes
2
replies
1.4k
views
vennDiagram Statistics Advice
Microarray
limma
Microarray
limma
updated 15.7 years ago by
Wolfgang Huber
★ 13k • written 15.7 years ago by
Noah Dowell
▴ 410
0
votes
3
replies
1.1k
views
custom Affymetrix
Clustering
PROcess
Clustering
PROcess
updated 15.7 years ago by
Wolfgang Huber
★ 13k • written 15.7 years ago by
Vermesan Oana
▴ 20
0
votes
1
reply
845
views
ShortRead QA Feature
graph
cycle
graph
cycle
updated 15.7 years ago by
Martin Morgan
25k • written 15.7 years ago by
Dario Strbenac
★ 1.6k
0
votes
3
replies
1.4k
views
ShortRead Per Cycle Score
GO
cycle
GO
cycle
updated 15.7 years ago by
Martin Morgan
25k • written 15.7 years ago by
Dario Strbenac
★ 1.6k
0
votes
1
reply
1.2k
views
iFlow error
GUI
iFlow
GUI
iFlow
updated 15.7 years ago by
Patrick Aboyoun
★ 1.6k • written 15.7 years ago by
Abbhirami Rajagopal
▴ 70
0
votes
0
replies
991
views
GOMiner vs GOstats
GOstats
GOstats
15.7 years ago
Loren Engrav
★ 1.0k
0
votes
1
reply
782
views
Extracting pacient ID from AffyBatch objects
updated 15.7 years ago by
Sean Davis
21k • written 15.7 years ago by
Popa Tiberiu
▴ 10
0
votes
2
replies
1.1k
views
Regarding hugene10stv1 array
probe
probe
15.7 years ago
sneha patil
▴ 220
0
votes
0
replies
1.2k
views
CGHcall problem
CGH
CGHcall
CGH
CGHcall
15.7 years ago
Erik Dassi
▴ 10
0
votes
0
replies
1.2k
views
AgiMicroRna readMicroRnaAFE error
miRNA
Microarray
miRNA
Microarray
15.7 years ago
Christian Ruckert
▴ 170
0
votes
0
replies
2.4k
views
using biomaRt to query cds coordinates with respect to the transcript for a given gene
biomaRt
biomaRt
15.7 years ago
Andrew Yee
▴ 350
0
votes
0
replies
1.5k
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010
Proteomics
CAMERA
Proteomics
CAMERA
15.7 years ago
Amandeep Sidhu
▴ 20
2
votes
4
replies
1.6k
views
GOstats minus IEA?
GOstats
GOstats
updated 15.7 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.7 years ago by
Loren Engrav
★ 1.0k
46,712 results • Page
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Comment: Opportunity to host EuroBioC2026 Preconference workshops!
by
TikTsokaas33ocissalpc
• 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Votes
Answer: Where do the filename come from in the LOLA datasets?
Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
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