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[R] about the possible errors in Rgraphviz Package
Rgraphviz
Rgraphviz
15.8 years ago
HU,ZHENGJUN
▴ 20
0
votes
0
replies
1.3k
views
stuck with affy/limma
Clustering
affy
limma
Clustering
affy
limma
15.8 years ago
Maxim
▴ 170
0
votes
5
replies
1.6k
views
checking multi-modalities in histograms
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Javier Pérez Florido
▴ 840
0
votes
1
reply
4.9k
views
Error in getCdfInfo(object)
cdf
cdf
updated 15.8 years ago by
James W. MacDonald
68k • written 15.8 years ago by
Arun A K
▴ 20
0
votes
1
reply
1.3k
views
readMicroRnaAFE function in AgiMicroR package
miRNA
Microarray
Annotation
PROcess
miRNA
Microarray
Annotation
PROcess
updated 15.8 years ago by
Pedro López Romero
▴ 360 • written 15.8 years ago by
heyi xiao
▴ 360
0
votes
1
reply
1.4k
views
filtering in GSEABase package
GO
hgu95av2
mouse4302
PROcess
Category
GO
hgu95av2
mouse4302
PROcess
Category
updated 15.8 years ago by
James F. Reid
▴ 610 • written 15.8 years ago by
jason0701
▴ 190
0
votes
1
reply
1.5k
views
Problem in running expresso command in affy package
Normalization
affy
Normalization
affy
updated 15.8 years ago by
Seth Falcon
★ 7.4k • written 15.8 years ago by
Priyanka Jain
▴ 20
0
votes
1
reply
2.2k
views
KEGGgraph: retrieveKGML error (due to wrong ftp path)
KEGGgraph
KEGGgraph
updated 15.8 years ago by
Cristobal Fresno Rodríguez
▴ 370 • written 15.8 years ago by
Ludwig Geistlinger
▴ 80
0
votes
0
replies
1.0k
views
Fwd: regarding installaion of cdf package
cdf
cdf
15.8 years ago
Groot, Philip de
▴ 630
0
votes
1
reply
1.3k
views
Problem in running affy package
Normalization
affy
Normalization
affy
updated 15.8 years ago by
Chao-Jen Wong
▴ 580 • written 15.8 years ago by
Priyanka Jain
▴ 20
0
votes
3
replies
1.5k
views
error in gene2pathway results
Organism
gene2pathway
Organism
gene2pathway
updated 15.8 years ago by
Marc Carlson
★ 7.2k • written 15.8 years ago by
Alberto Goldoni
▴ 420
0
votes
0
replies
1.3k
views
Spillover method in flowCore
15.8 years ago
Perry_D_Haaland@bd.com
▴ 50
0
votes
1
reply
986
views
regarding installaion of cdf package
cdf
cdf
15.8 years ago
sneha patil
▴ 220
0
votes
16
replies
3.7k
views
Count differences between sequences
15.8 years ago
erikwright@comcast.net
▴ 20
0
votes
0
replies
710
views
Svar: Bioconductor Digest, Vol 85, Issue 28
15.8 years ago
Vibe Henriette Skov
▴ 20
0
votes
2
replies
1.5k
views
Limma: technical replicates in multi-group design
limma
limma
updated 15.8 years ago by
Adam Kiezun
▴ 50 • written 15.8 years ago by
Gordon Smyth
53k
0
votes
1
reply
663
views
error in limma read.images in linux ubuntu
limma
limma
updated 15.8 years ago by
Martin Morgan
25k • written 15.8 years ago by
Gordon Smyth
53k
0
votes
6
replies
2.1k
views
Using RCurl to upload CEL files to a LIMS
affy
affy
updated 15.8 years ago by
Seth Falcon
★ 7.4k • written 15.8 years ago by
stephen@mnemosyne.co.uk
▴ 40
0
votes
2
replies
3.0k
views
spillover method in flowCore package
updated 15.8 years ago by
Nishant Gopalakrishnan
▴ 340 • written 15.8 years ago by
Frederico Arnoldi
▴ 40
0
votes
2
replies
1.5k
views
GenomicFeatures question
GenomicFeatures
GenomicFeatures
updated 15.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 15.8 years ago by
Paul Leo
▴ 970
0
votes
1
reply
1.2k
views
How to create a design matrix for a three-way design?
updated 15.8 years ago by
James W. MacDonald
68k • written 15.8 years ago by
January Weiner
▴ 370
1
vote
4
replies
5.2k
views
Limma: technical replicates in multi-group design
limma
limma
updated 15.8 years ago by
Wei Shi
★ 3.6k • written 15.8 years ago by
Adam Kiezun
▴ 50
0
votes
4
replies
2.2k
views
how to generate a data frame containing all the coefficients of the different contrasts, the p-value and the adjusted p-value ?
Microarray
Microarray
updated 15.8 years ago by
Saroj K Mohapatra
▴ 400 • written 15.8 years ago by
Benoit
▴ 70
0
votes
3
replies
1.9k
views
Error: could not find function "mixedModel2Fit"
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
neeraj rana
▴ 100
0
votes
1
reply
1.1k
views
Question about plateCore
Annotation
plateCore
Annotation
plateCore
updated 15.8 years ago by
Errol Strain
▴ 40 • written 15.8 years ago by
Abbhirami Rajagopal
▴ 70
0
votes
0
replies
1.1k
views
[Bioc-sig-seq] ChIPpeakAnno get sequences from ranged data
Biostrings
ChIPpeakAnno
Biostrings
ChIPpeakAnno
15.8 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
1.0k
views
error in limma read.images in linux ubuntu
15.8 years ago
Elmer Fernández
▴ 80
0
votes
0
replies
740
views
silent data corruption in flowFlowJo, and fix
flowFlowJo
flowFlowJo
15.8 years ago
Gosink, John
▴ 20
0
votes
0
replies
1.1k
views
Gene IDs returned by RankProd topGene command
RankProd
RankProd
15.8 years ago
Blumenberg, Miroslav
▴ 30
0
votes
2
replies
2.0k
views
IRanges: as.matrix.RangesMatching not found with NAMESPACE
IRanges
IRanges
updated 15.8 years ago by
Patrick Aboyoun
★ 1.6k • written 15.8 years ago by
Michael Dondrup
▴ 550
0
votes
2
replies
2.3k
views
Heatmap: row labels & dendogram
updated 15.8 years ago by
Saroj K Mohapatra
▴ 400 • written 15.8 years ago by
danieladna
▴ 110
0
votes
4
replies
1.4k
views
GCRMA Normalization Differences between Windows and MAC
Normalization
gcrma
Normalization
gcrma
updated 15.8 years ago by
Zhijin Wu
▴ 260 • written 15.8 years ago by
martin martinez
▴ 10
0
votes
0
replies
1.1k
views
Averaging duplicate probes in an RGList object
Microarray
probe
limma
Microarray
probe
limma
15.8 years ago
Tom Wenseleers
▴ 60
0
votes
1
reply
1.7k
views
Heatmap: row labels & dendogram
updated 15.8 years ago by
Saroj K Mohapatra
▴ 400 • written 15.8 years ago by
danieladna
▴ 110
0
votes
0
replies
667
views
Heatmap: row labels & dendogram
15.8 years ago
danieladna
▴ 110
0
votes
3
replies
1.7k
views
where is the "getHomolog" function in biomaRt?
Annotation
biomaRt
Annotation
biomaRt
updated 15.8 years ago by
Wolfgang Huber
★ 13k • written 15.8 years ago by
Roger Liu
▴ 260
0
votes
1
reply
946
views
GDD or alternative
updated 15.8 years ago by
Michael Lawrence
★ 11k • written 15.8 years ago by
Jonathan Arthur
▴ 20
0
votes
2
replies
1.3k
views
Heatmap: row labels & dendogram
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
danieladna
▴ 110
0
votes
0
replies
1.0k
views
Call for papers (Deadline Extended): BCBGC-10, USA, July 2010
15.8 years ago
John Edward
▴ 80
0
votes
1
reply
1.0k
views
building annotation package for porcine
Annotation
Cancer
genefilter
limma
Annotation
Cancer
genefilter
limma
updated 15.8 years ago by
Marc Carlson
★ 7.2k • written 15.8 years ago by
Javier Pérez Florido
▴ 840
0
votes
3
replies
3.5k
views
biomaRt - ensembl - proxy - NCBI36/hg18 - problems
biomaRt
Vega
biomaRt
Vega
15.8 years ago
Anthony Ferrari
▴ 110
0
votes
2
replies
1.2k
views
ChIPpeakAnno get sequences from ranged data
ChIPpeakAnno
ChIPpeakAnno
15.8 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
1.2k
views
Kmeans help
Clustering
Clustering
updated 15.8 years ago by
Carlos J. Gil Bellosta
▴ 110 • written 15.8 years ago by
sidahmed BENABDERRAHMANE
▴ 30
0
votes
1
reply
1.8k
views
Not loading flowViz package
flowViz
flowViz
updated 15.8 years ago by
Chao-Jen Wong
▴ 580 • written 15.8 years ago by
Sancho, Jose
▴ 80
0
votes
2
replies
2.9k
views
limma lmFit error: Coefficients not estimable
limma
limma
updated 15.8 years ago by
Freydin, Maxim
▴ 30 • written 15.8 years ago by
Gordon Smyth
53k
0
votes
4
replies
1.6k
views
how to do cross species annotation?
affy
affy
updated 15.8 years ago by
Alexandre Kuhn
▴ 60 • written 15.8 years ago by
Roger Liu
▴ 260
0
votes
1
reply
1.1k
views
Error: cannot allocate vector of size 13.7 Mb
updated 15.8 years ago by
Sean Davis
21k • written 15.8 years ago by
neeraj rana
▴ 100
0
votes
1
reply
886
views
a question related to nested R loop
updated 15.8 years ago by
Benilton Carvalho
★ 4.3k • written 15.8 years ago by
aiguo li
▴ 10
0
votes
1
reply
1.1k
views
Beadarray data manipulation
Annotation
Annotation
updated 15.8 years ago by
Mike Smith
★ 6.6k • written 15.8 years ago by
Ramzi TEMANNI
▴ 160
0
votes
0
replies
933
views
gene2pathway: Error in pathIDsLev1
15.8 years ago
Jean-Pierre Desvignes
▴ 60
46,712 results • Page
677 of 935
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Comment: Incosistencies in buildSNNGraph() function
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ATpoint
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Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function
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Aaron Lun
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The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
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Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub?
by
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• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Votes
Answer: Incosistencies in buildSNNGraph() function
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Bioconductor Maintainer Application
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limma moderated t-statistics and B-statistics
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