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Votes
0
votes
0
replies
1.5k
views
Using Ringo
Normalization
vsn
convert
Ringo
Normalization
vsn
convert
Ringo
18.5 years ago
Joern Toedling
▴ 730
0
votes
1
reply
606
views
nimblegen aCGH
updated 18.5 years ago by
Mark Robinson
★ 1.1k • written 18.5 years ago by
yoo hoo
▴ 60
0
votes
0
replies
1.2k
views
passing "main" argument to function plotPCA of affycoretools
18.5 years ago
Mark W Kimpel
▴ 830
0
votes
3
replies
1.1k
views
Getting all the gene names and the locus link ID from different platforms
updated 18.5 years ago by
Marc Carlson
★ 7.2k • written 18.5 years ago by
Alex Tsoi
▴ 260
0
votes
0
replies
1.2k
views
problems in limma
Microarray
probe
limma
PROcess
Microarray
probe
limma
PROcess
18.5 years ago
De-Jian ZHAO
▴ 240
0
votes
1
reply
237
views
Installing Ruuid library
updated 18.5 years ago by
Hervé Pagès
16k • written 18.5 years ago by
francesca
▴ 10
0
votes
0
replies
838
views
heatmap.2
18.5 years ago
Max Kauer
▴ 140
0
votes
1
reply
878
views
affyQCReport before and after normalization
PROcess
PROcess
updated 18.5 years ago by
James W. MacDonald
68k • written 18.5 years ago by
Sebastien Gerega
▴ 30
0
votes
4
replies
1.9k
views
Affymetrix annotation package
Annotation
Annotation
updated 18.5 years ago by
John Zhang
★ 2.9k • written 18.5 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
0
replies
870
views
Looking for extra Income? Please Read.
PROMISE
PROMISE
18.5 years ago
hardware.inc505@gmail.com
▴ 10
0
votes
1
reply
575
views
statistical course
Microarray
Microarray
updated 18.5 years ago by
Kasper Daniel Hansen
★ 6.5k • written 18.5 years ago by
Noura Chelbat
▴ 10
0
votes
1
reply
845
views
exprSet in alongChrom from geneplotter
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Heidi Dvinge
★ 2.0k
0
votes
3
replies
1.3k
views
GO analysis code snippet
GO
GO
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Simon Lin
▴ 270
0
votes
16
replies
3.8k
views
Finding GO leaf nodes for an ontology - which package?
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Tim Smith
★ 1.1k
0
votes
1
reply
685
views
One-Color Agilent miRNA microarrays
18.5 years ago
Francesco Favero
▴ 60
0
votes
3
replies
1.3k
views
One-Color Agilent miRNA microarrays
updated 18.5 years ago by
Pedro López Romero
▴ 360 • written 18.5 years ago by
Francesco Favero
▴ 60
0
votes
0
replies
907
views
globalTest - memory and input
18.5 years ago
Simo.rossi
▴ 70
0
votes
1
reply
1.3k
views
FDR of enrichment analysis and other questions on GOstats
updated 18.5 years ago by
Mark W Kimpel
▴ 830 • written 18.5 years ago by
Weiwei Shi
★ 1.2k
0
votes
0
replies
705
views
FYI: update on recent flurry of back-dated posts
Cancer
Cancer
18.5 years ago
Seth Falcon
★ 7.4k
0
votes
3
replies
1.4k
views
memory - global test
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Simo.rossi
▴ 70
0
votes
2
replies
913
views
Bug in probeNames()
Annotation
cdf
Annotation
cdf
updated 18.5 years ago by
lgautier@altern.org
▴ 950 • written 18.5 years ago by
Groot, Philip de
▴ 630
0
votes
10
replies
2.7k
views
comparing GO lists
Annotation
GO
Cancer
graph
GOstats
Annotation
GO
Cancer
graph
GOstats
updated 18.5 years ago by
Ana Conesa
▴ 130 • written 18.5 years ago by
rgentleman
★ 5.5k
0
votes
24
replies
4.3k
views
Error in QAReport function of package affyQCReport
affy
affy
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Mark W Kimpel
▴ 830
0
votes
0
replies
1.0k
views
beadarray package: problem with bead level data
GO
beadarray
GO
beadarray
18.5 years ago
Krys Kelly
▴ 270
0
votes
1
reply
1.1k
views
affxparser: bug fix in Bioc 2.0
affxparser
affxparser
18.5 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
3
replies
2.0k
views
beadarray package: problem with bead level data
geneplotter
affy
affyio
beadarray
quantsmooth
beadarraySNP
geneplotter
affy
affyio
updated 18.5 years ago by
Mike Smith
▴ 40 • written 18.5 years ago by
Krys Kelly
▴ 270
0
votes
3
replies
1.1k
views
read.phenoData vs read.AnnotatedDataFrame
18.5 years ago
Johnstone, Alice
▴ 410
0
votes
2
replies
1.1k
views
Problems with gcrma using latest version of R and Bioconductor
Cancer
Cancer
updated 18.5 years ago by
Francois Pepin
★ 1.3k • written 18.5 years ago by
Seth Falcon
★ 7.4k
0
votes
0
replies
603
views
Post-doctoral position in statistical genomics at the Research Institute of the Hospital for Sick Children - Toronto, Canada
18.5 years ago
Joseph Beyene
▴ 10
0
votes
0
replies
300
views
random permutation for one-sample high dimensional data set
18.5 years ago
carol white
▴ 680
0
votes
1
reply
666
views
Color Question about image function in graphics package
updated 18.5 years ago by
Joern Toedling
▴ 730 • written 18.5 years ago by
swang
▴ 120
0
votes
1
reply
772
views
problem with fetching gene information in biomaRt for mouse_430_2
updated 18.5 years ago by
Cei Abreu-Goodger
▴ 830 • written 18.5 years ago by
oolongoni
▴ 40
0
votes
5
replies
1.6k
views
how to store multiple relationships between nodes in graphNEL?
graph
graph
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Paul Shannon
★ 1.1k
0
votes
2
replies
2.8k
views
Rgraphviz - how to use node positions from one graph as node positions in another?
graph
graph
updated 18.5 years ago by
Li.Long@isb-sib.ch
▴ 510 • written 18.5 years ago by
Søren Højsgaard
▴ 50
0
votes
3
replies
1.2k
views
Problems with gcrma using latest version of R and Bioconductor
Normalization
cdf
gcrma
Normalization
cdf
gcrma
updated 18.5 years ago by
James W. MacDonald
68k • written 18.5 years ago by
Sebastian Bauer
▴ 60
0
votes
0
replies
1.2k
views
Limma and randomized block design for time-course microarray experiment
Microarray
Cancer
limma
Microarray
Cancer
limma
18.5 years ago
Gordon Smyth
53k
0
votes
1
reply
587
views
retrieving specific FDR value from SAM
updated 18.5 years ago by
Holger Schwender
▴ 900 • written 18.5 years ago by
Alex Tsoi
▴ 260
0
votes
0
replies
717
views
LAD (Logical analysis of data) algorithm package?
18.5 years ago
Weiyin Zhou
▴ 220
0
votes
2
replies
1.5k
views
How to make a list as below
updated 18.5 years ago by
Weiwei Shi
★ 1.2k • written 18.5 years ago by
Li, Aiguo NIH/NCI
▴ 110
0
votes
1
reply
632
views
limma contrast matrix
18.5 years ago
Florence Combes
▴ 90
0
votes
0
replies
718
views
extraction of detectable genes in illumina data.
Cancer
Cancer
18.5 years ago
Zara Ghazoui
▴ 10
0
votes
1
reply
760
views
LumiBatch Object - Help
updated 18.5 years ago by
Michal Blazejczyk
▴ 320 • written 18.5 years ago by
Sharon Anbu
▴ 480
0
votes
0
replies
803
views
generic quality control
18.5 years ago
Weiwei Shi
★ 1.2k
0
votes
1
reply
618
views
fitPLM query
updated 18.5 years ago by
Ben Bolstad
★ 1.2k • written 18.5 years ago by
dhruv pant
▴ 30
0
votes
0
replies
839
views
Limma and randomized block design for time-course microarray experiment
Microarray
Cancer
Microarray
Cancer
18.5 years ago
Serge Eifes
▴ 90
0
votes
10
replies
3.1k
views
how to revert to an older limma version?
18.5 years ago
Maya Bercovich
▴ 50
0
votes
2
replies
1.5k
views
how to make probe environments for use with GCRMA
cdf
makecdfenv
gcrma
cdf
makecdfenv
gcrma
updated 18.5 years ago by
claire
▴ 50 • written 18.5 years ago by
Wittner, Ben
▴ 290
0
votes
3
replies
736
views
Getting GO term from GOids
updated 18.5 years ago by
Seth Falcon
★ 7.4k • written 18.5 years ago by
Alex Tsoi
▴ 260
0
votes
0
replies
1.2k
views
BIRD 2008 call for workshop proposal
PROcess
PROcess
18.5 years ago
Prof. Roland Wagner
▴ 100
0
votes
0
replies
1.2k
views
Input for KS test
Genetics
GO
GOstats
Category
topGO
Genetics
GO
GOstats
Category
topGO
18.5 years ago
Ken Termiso
▴ 250
46,711 results • Page
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Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa
by
Gordon Smyth
53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
Comment: Guitar R package requires update due to dependency GenomicFeatures
by
ferran.llobet.cabau
▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Votes
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
A: how to control age and gender effect in expression data using DESeq2
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