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0
votes
0
replies
870
views
R-Fest: Workshops on S, R and Bioconductor
GO
Cancer
GO
Cancer
19.7 years ago
David Scott
▴ 20
0
votes
1
reply
2.8k
views
update.packages with bioconductor
updated 19.7 years ago by
Hervé Pagès
16k • written 19.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
0
replies
962
views
A questions related to affymetrix chip normalizationfrom multiple platform
hgu133a
hgu133b
gcrma
hgu133a
hgu133b
gcrma
19.7 years ago
Li, Aiguo NIH/NCI
▴ 110
0
votes
1
reply
825
views
installation permisssions
updated 19.7 years ago by
Wolfgang Huber
★ 13k • written 19.7 years ago by
claudio.is@libero.it
▴ 210
0
votes
1
reply
834
views
A questions related to affymetrix chip normalization from multiple platform
updated 19.7 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 19.7 years ago by
Li, Aiguo NIH/NCI
▴ 110
0
votes
2
replies
778
views
LIMMA:design and contrast matrices for biological and technical replicates
updated 19.7 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 19.7 years ago by
Mike White
▴ 30
0
votes
2
replies
1.2k
views
Predicting number of replicates
Microarray
Microarray
19.7 years ago
Khan, Sohail
▴ 490
0
votes
2
replies
977
views
Problem with metadata
updated 19.7 years ago by
Björn Usadel
▴ 250 • written 19.7 years ago by
Claudia Döring
▴ 40
0
votes
1
reply
447
views
function checkfac in rowttests
updated 19.7 years ago by
Wolfgang Huber
★ 13k • written 19.7 years ago by
Matthias Kohl
▴ 10
0
votes
0
replies
638
views
AffylmGUI
affylmGUI
affylmGUI
19.7 years ago
Gordon Smyth
53k
0
votes
3
replies
838
views
R crashing, updating
updated 19.7 years ago by
Hervé Pagès
16k • written 19.7 years ago by
Tarun Nayar
▴ 190
0
votes
1
reply
1.2k
views
Different results Limma vs LimmaGUI?
limma
limmaGUI
limma
limmaGUI
updated 19.7 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 19.7 years ago by
Gordon Smyth
53k
0
votes
1
reply
1.1k
views
Plotting symbols for MA plot in Affycomp
affycomp
affycomp
updated 19.7 years ago by
James W. MacDonald
68k • written 19.8 years ago by
McGee, Monnie
▴ 300
0
votes
3
replies
1.4k
views
limma toptable missing ProbeId/ documentation question
limma
limma
updated 19.7 years ago by
James W. MacDonald
68k • written 19.7 years ago by
Björn Usadel
▴ 250
0
votes
2
replies
1.2k
views
affy package and porcine arrays
cdf
affy
cdf
affy
19.7 years ago
David Carter
▴ 50
0
votes
0
replies
928
views
LIMMA: testing for batch effects
Cancer
limma
Cancer
limma
19.7 years ago
Adaikalavan Ramasamy
★ 1.8k
0
votes
0
replies
1.2k
views
Different results Limma vs LimmaGUI?
limma
limmaGUI
limma
limmaGUI
19.7 years ago
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
1
reply
1.5k
views
CodeLink Package: Not a Codelink exported file.
codelink
ArrayExpress
codelink
ArrayExpress
updated 19.7 years ago by
Diego Diez
▴ 760 • written 19.7 years ago by
Srinivas Iyyer
▴ 600
0
votes
0
replies
524
views
function "checkfac" in package "genefilter"
19.7 years ago
Matthias Kohl
▴ 160
0
votes
2
replies
1.5k
views
Rgraphviz install problem
Rgraphviz
Rgraphviz
updated 19.7 years ago by
Hervé Pagès
16k • written 19.7 years ago by
Shamit Soneji
▴ 30
0
votes
2
replies
671
views
Affymetrix exon arrays?
updated 19.7 years ago by
Johannes Rainer
▴ 300 • written 19.8 years ago by
Michael Seewald
▴ 10
0
votes
3
replies
1.1k
views
R CMD --args
updated 19.7 years ago by
Weiwei Shi
★ 1.2k • written 19.7 years ago by
D.Enrique ESCOBAR ESPINOZA
▴ 360
0
votes
0
replies
736
views
Fwd: Limma: How to read gene list, coordinates of sport when NO GAL file available
limma
ArrayExpress
limma
ArrayExpress
19.7 years ago
Gordon Smyth
53k
0
votes
8
replies
1.2k
views
Building BioC packages from source on MacOSX (R-2.3.0)
updated 19.7 years ago by
Seth Falcon
★ 7.4k • written 19.7 years ago by
Benilton Carvalho
★ 4.3k
0
votes
0
replies
724
views
Limma: How to read gene list, coordinates of sport when NO GAL file available
limma
ArrayExpress
limma
ArrayExpress
19.7 years ago
Gordon Smyth
53k
0
votes
0
replies
1.1k
views
B value cutoff in LIMMA
Network
Cancer
limma
Network
Cancer
limma
19.7 years ago
Gordon Smyth
53k
0
votes
0
replies
870
views
Type I and Type II errors: Multiple Testing
19.8 years ago
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
1.5k
views
PhD Student Position in Statistics in Switzerland on Bayesian Methods for Integrated Genomics
Microarray
Bayesian
Microarray
Bayesian
19.8 years ago
Ivo Kwee
▴ 30
0
votes
6
replies
1.3k
views
Limma: combining 2 microarray studies
19.8 years ago
Ana Conesa
▴ 140
0
votes
0
replies
930
views
B value cutoff in LIMMA
Cancer
limma
Cancer
limma
19.8 years ago
Richard Friedman
★ 2.0k
0
votes
1
reply
790
views
Affychip coli asv2 annotation files
Annotation
AnnBuilder
Annotation
AnnBuilder
updated 19.8 years ago by
Seth Falcon
★ 7.4k • written 19.8 years ago by
lemerle@embl.de
▴ 50
0
votes
0
replies
939
views
Hot to find gene names and descriptions from accession numbers ?
annotate
annotate
19.8 years ago
Giulio Di Giovanni
▴ 540
0
votes
0
replies
327
views
Different results from two separate comparisons
19.8 years ago
Delong Liu
▴ 10
0
votes
4
replies
1.3k
views
pm() mm() functionality changed?
probe
probe
updated 19.8 years ago by
James W. MacDonald
68k • written 19.8 years ago by
DMITRY GRIGORYEV
▴ 90
0
votes
1
reply
1.2k
views
Compiling RMAGEML 2.5.3 or 2.4.0 under Mac OS X 10.4.5 fails
RMAGEML
RMAGEML
19.8 years ago
Marc Saric
▴ 70
0
votes
6
replies
1.6k
views
Limma: background correction. Use or ignore?
safe
safe
updated 19.8 years ago by
Henrik Bengtsson
★ 2.4k • written 19.8 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
1
reply
889
views
[R] Cross validation reviews
updated 19.8 years ago by
Stephen Henderson
★ 1.0k • written 19.8 years ago by
portnoy@supereva.it
▴ 20
0
votes
0
replies
638
views
request for gtype_cel_to_pq
affy
affy
19.8 years ago
Dick Beyer
★ 1.4k
0
votes
3
replies
3.4k
views
AFFX-BioB-3_at annotation
hgu133plus2
mouse4302
hgu133plus2
mouse4302
19.8 years ago
Wu, Xiwei
▴ 350
0
votes
0
replies
895
views
Cross validation reviews
Microarray
Microarray
19.8 years ago
McGee, Monnie
▴ 300
0
votes
0
replies
592
views
FW: AnnBuilder package and URLs
AnnBuilder
AnnBuilder
19.8 years ago
Sean Davis
21k
0
votes
3
replies
1.8k
views
internet2.dll equivalent for Mac
PROcess
PROcess
updated 19.8 years ago by
stefano iacus
▴ 430 • written 19.8 years ago by
Jonathan Arthur
▴ 70
0
votes
0
replies
810
views
running AnnBuilder Vignette:Error in baseFile
AnnBuilder
AnnBuilder
19.8 years ago
Xue Lin
▴ 10
0
votes
1
reply
1.1k
views
AnnBuilder package and URLs
AnnBuilder
AnnBuilder
updated 19.8 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 19.8 years ago by
Tabare Mourot
▴ 100
0
votes
0
replies
1.6k
views
Problems using text to subset array information from anexpression set
Cancer
cdf
reposTools
affy
PROcess
Cancer
cdf
reposTools
affy
PROcess
19.8 years ago
Alvord, Greg DMS [Contr]
▴ 160
0
votes
3
replies
2.8k
views
Limma: background correction. Use or ignore?
Microarray
Cancer
affy
limma
limmaGUI
Microarray
Cancer
affy
limma
limmaGUI
updated 19.8 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 19.8 years ago by
Gordon Smyth
53k
0
votes
4
replies
1.8k
views
Problems using text to subset array information from an expression set
cdf
reposTools
affy
PROcess
cdf
reposTools
affy
PROcess
updated 19.8 years ago by
Benilton Carvalho
★ 4.3k • written 19.8 years ago by
Jeff Lande
▴ 110
0
votes
0
replies
395
views
difference Between ANOVA 2 way and Factors effect model and fews questions
19.8 years ago
gregory voisin
▴ 430
0
votes
1
reply
2.1k
views
BioC] using limma with no replicates
genefilter
limma
genefilter
limma
updated 19.8 years ago by
Pedro López Romero
▴ 360 • written 19.8 years ago by
Gordon Smyth
53k
0
votes
0
replies
654
views
Micro-RNA research
19.8 years ago
McGee, Monnie
▴ 300
46,703 results • Page
827 of 935
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Answer: ATACseq rudimentary questions
by
Kevin Blighe
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For differential analysis tools like DiffTF and TOBIAS, the standard and statistically sound approach is to create **one large consensus pe…
Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
by
Gordon Smyth
53k
The warning message is telling you that you already have the packages installed. However, you might consider upgrading to the current vers…
Comment: Empty boxes in treemap plot rrvgo package
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Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis
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adam80haynes
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That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
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Answer: How to install packages such as TCGAbiolinks, SumarizedExperiment?
A: limma-voom duplicateCorrelation once or twice, difference?
A: limma: comparison of repeat measurements - blocking or within-subject correlatio
Answer: DecideTest vs topTAGs in edgeR
A: LIMMA time series spline model.matrix design setup
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