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Views
Votes
0
votes
0
replies
729
views
limma anova table?
limma
limma
20.0 years ago
Jianping Jin
▴ 890
0
votes
8
replies
2.5k
views
getBioC problem
updated 20.0 years ago by
Seth Falcon
★ 7.4k • written 20.0 years ago by
Amy Mikhail
▴ 460
0
votes
5
replies
1.2k
views
M vs M plots- dye effect in dyeswap exp
updated 20.0 years ago by
Naomi Altman
★ 6.0k • written 20.0 years ago by
lzarzabal@aol.com
▴ 10
0
votes
3
replies
1.5k
views
heatmap
20.0 years ago
kfbargad@ehu.es
▴ 270
0
votes
0
replies
1.0k
views
Job Posting: "Lab head Biomarker"
Microarray
Microarray
20.0 years ago
Michael Seewald
▴ 10
0
votes
0
replies
1.0k
views
problems with hgu133a2?
hgu133a2
probe
affy
hgu133a2
probe
affy
20.0 years ago
Dick Beyer
★ 1.4k
0
votes
6
replies
1.8k
views
affy chips' quality control question
affy
affy
20.0 years ago
Ren Na
▴ 250
0
votes
2
replies
1.4k
views
justRMA using incorrect default cdf
GO
Survival
rat2302
cdf
annotate
genefilter
affy
limma
affycoretools
GO
Survival
cdf
20.0 years ago
Kimpel, Mark W
▴ 890
0
votes
0
replies
531
views
[Fwd: Fwd: M vs M plots- dye effect in dyeswap exp]
20.0 years ago
zarzabal
▴ 20
0
votes
0
replies
1.1k
views
[RClassification on Imbalanced Data
Classification
Classification
20.0 years ago
portnoy@supereva.it
▴ 20
0
votes
0
replies
537
views
bioconductor.org downloads available again
20.0 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.5k
views
biocLite.R
updated 20.0 years ago by
Seth Falcon
★ 7.4k • written 20.0 years ago by
Glazko, Galina
▴ 10
0
votes
1
reply
711
views
Calculating the average differential exprression
Microarray
Microarray
updated 20.0 years ago by
James W. MacDonald
68k • written 20.0 years ago by
michael watson IAH-C
★ 3.4k
0
votes
0
replies
966
views
Workshop : Statistical Analysis of Genetic and Gene Expression Data
20.0 years ago
Adaikalavan Ramasamy
★ 1.8k
0
votes
0
replies
690
views
error in limma read.maimages(files, source="imagene")
limma
limma
20.0 years ago
Gordon Smyth
53k
0
votes
0
replies
819
views
mapping probes between different platforms [again]
Annotation
annotate
AnnBuilder
Annotation
annotate
AnnBuilder
20.0 years ago
Mattias de Hollander
▴ 20
0
votes
0
replies
396
views
mapping probes between different platforms
20.0 years ago
Mattias de Hollander
▴ 20
0
votes
1
reply
964
views
annotation hgu133plus2 problem,
hgu133plus2
hgu133plus2
updated 20.0 years ago by
James W. MacDonald
68k • written 20.0 years ago by
Saurin D. Jani
▴ 360
0
votes
3
replies
1.3k
views
mouse 430_2 error message
gcrma
gcrma
updated 20.0 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 20.0 years ago by
DMITRY GRIGORYEV
▴ 90
0
votes
1
reply
886
views
Annotation packages for E.Coli
Annotation
annotate
Annotation
annotate
updated 20.0 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 20.0 years ago by
Alex Sanchez
▴ 10
0
votes
3
replies
1.8k
views
widgetTools wFuns problem
DynDoc
tkWidgets
reposTools
widgetTools
DynDoc
tkWidgets
reposTools
widgetTools
updated 20.0 years ago by
John Zhang
★ 2.9k • written 20.0 years ago by
mattia
▴ 80
0
votes
2
replies
1.2k
views
Hier.Clustering: group size effect
Clustering
Clustering
updated 20.0 years ago by
Kevin R. Coombes
▴ 140 • written 20.0 years ago by
Heike Pospisil
▴ 310
0
votes
0
replies
1.1k
views
design matrix question
limma
limma
20.0 years ago
Marcelo Luiz de Laia
▴ 770
0
votes
0
replies
1.1k
views
Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
affylmGUI
limmaGUI
affylmGUI
limmaGUI
20.0 years ago
James Wettenhall
▴ 1000
0
votes
0
replies
810
views
problems with GO package data
GO
Cancer
hgu95av2
probe
Biobase
annotate
genefilter
multtest
graph
GOstats
GO
Cancer
20.0 years ago
Yu-An Dong
▴ 40
0
votes
0
replies
962
views
how to add contrast for lmFit in limma?
20.0 years ago
Jianping Jin
▴ 890
0
votes
3
replies
1.2k
views
microarray database
updated 20.0 years ago by
David Ruau
▴ 110 • written 20.0 years ago by
Thomas Litman
▴ 10
0
votes
0
replies
1.1k
views
error in limma read.maimages(files, source="imagene")
limma
limma
20.0 years ago
Georg Otto
▴ 510
0
votes
3
replies
2.5k
views
Drawing network graphs (i.e. nodes and edges)
Network
Network
updated 20.0 years ago by
Saurin D. Jani
▴ 360 • written 20.0 years ago by
Peter
▴ 170
0
votes
0
replies
1.0k
views
RMA - answer found- AND ANOTHER QUESTION
Cancer
Cancer
20.0 years ago
Richard Friedman
★ 2.0k
0
votes
0
replies
1.4k
views
limma design: a basics questions for factorial analysis
GO
limma
GO
limma
20.0 years ago
Marcelo Luiz de Laia
▴ 770
0
votes
3
replies
1.4k
views
ad hoc tools for affy tiling arrays?
Normalization
Preprocessing
gcrma
Normalization
Preprocessing
gcrma
updated 20.0 years ago by
Dario Greco
▴ 310 • written 20.0 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
896
views
Graph Layout
graph
RBGL
graph
RBGL
20.0 years ago
Li Long
▴ 120
0
votes
0
replies
714
views
weights & normalizeBetweenArrays
Normalization
Normalization
20.0 years ago
Gordon Smyth
53k
0
votes
0
replies
932
views
LIMMA
limma
cycle
limma
cycle
20.0 years ago
Gordon Smyth
53k
0
votes
1
reply
924
views
affy: How to back transform the matrix to a vector? (low-level imaging)
updated 20.0 years ago by
Kasper Daniel Hansen
★ 6.5k • written 20.0 years ago by
Simon Lin
▴ 210
0
votes
0
replies
586
views
Distribution of DE genes on Chromosomes
20.0 years ago
Sharon Anbu
▴ 480
0
votes
0
replies
789
views
weights & normalizeBetweenArrays
Normalization
Normalization
20.0 years ago
Jenny Drnevich
★ 2.2k
0
votes
2
replies
794
views
samr and Spike in
updated 20.0 years ago by
James W. MacDonald
68k • written 20.0 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
951
views
hgu133plus2cdf
hgu133plus2
cdf
hgu133plus2
cdf
20.0 years ago
Seth Falcon
★ 7.4k
0
votes
4
replies
1.6k
views
conflict between ROC and Hmisc or Design?
updated 20.0 years ago by
rgentleman
★ 5.5k • written 20.0 years ago by
Shi, Tao
▴ 720
0
votes
1
reply
1.4k
views
LIMMA, SAM & clustering
Visualization
Clustering
limma
Visualization
Clustering
limma
updated 20.0 years ago by
James W. MacDonald
68k • written 20.0 years ago by
daniela.marconi@libero.it
▴ 100
0
votes
1
reply
1.4k
views
How to know in advance what kind of ID one has in using getGO or GetGene with biomaRt?
GO
probe
biomaRt
GO
probe
biomaRt
updated 20.0 years ago by
Steffen Durinck
▴ 420 • written 20.0 years ago by
Glynn, Earl
▴ 170
0
votes
13
replies
2.2k
views
problems with GO package data
updated 20.0 years ago by
rgentleman
★ 5.5k • written 20.0 years ago by
Yu-An Dong
▴ 40
0
votes
4
replies
1.8k
views
Error while using AnnBuilder
Annotation
GO
Organism
annotate
AnnBuilder
Annotation
GO
Organism
annotate
AnnBuilder
updated 20.0 years ago by
Seth Falcon
★ 7.4k • written 20.0 years ago by
TEXTORIS Julien
▴ 160
0
votes
2
replies
1.2k
views
RMA - answer found
updated 20.0 years ago by
Richard Friedman
★ 2.0k • written 20.0 years ago by
Naomi Altman
★ 6.0k
0
votes
0
replies
673
views
RMA
Normalization
probe
Normalization
probe
20.0 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
658
views
LIMMA
limma
limma
20.0 years ago
Matt Settles
▴ 10
0
votes
0
replies
1.4k
views
COURSE: Computational and Statistical Aspects of Microarray Analysis (IV)
Microarray
Proteomics
Normalization
Preprocessing
Cancer
Microarray
Proteomics
Cancer
20.0 years ago
stefano iacus
▴ 430
0
votes
0
replies
1.3k
views
Removing Batch effect with Limma
20.0 years ago
Ron Ophir
▴ 270
46,726 results • Page
834 of 935
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Comment: Pairwise comparison of multiple groups with different base
by
ja569116
• 0
Hi @mikelove I have a similar situation, and I feel that I have interpreted the results in the wrong way. In my case I would like to identi…
Comment: Are individual-mouse-based statistics possible in CellChat?
by
TikTsossakaas33ocissalpc
• 0
Questions about comparing groups and statistical significance highlight how data driven thinking matters across fields. In online mobile ga…
Comment: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink
by
ja569116
• 0
Hi @atpoint Thanks for the information. Could you please expand on when to use adjusted p-values vs nominal p-values. My understanding was …
Answer: limpa analysis advice
by
Gordon Smyth
53k
It is actually very hard to estimate the DPC from observed data, because the curve is function of unobserved intensities rather than a func…
Answer: When to use edgeR or limma
by
Gordon Smyth
53k
The short answer is that we generally prefer edgeR for applications with lots of small counts and limma for complex designs with random eff…
Votes
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
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Thomas Girke
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