Bioconductor Forum

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Awarded 9023 times (see all awards). Earned by the following contributors:

thkapell ▴ 10

4 years ago

Helmholtz Center Munich, Germany

DE analysis model matrix for paired samples

Assa Yeroslaviz ★ 1.5k

4 years ago

Germany

catchKallisto results are not counts

i.sudbery ▴ 40

4 years ago

European Union

Use of shrunken LFCs to address questions about the distribution of LFCs between gene categories.

JB ▴ 10

4 years ago

United States

Is it valid to do gene comparisons on VST or rlog transformed data?

jms2520 ▴ 10

4 years ago

United States

Filtering Clusterprofiler Result Object

mathavanbioinfo ▴ 20

4 years ago

India

How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?

Talip ▴ 10

4 years ago

Türkiye

TCGAbiolinks installation error because of R.oo installation error

changxu.fan ▴ 20

4 years ago

United States

How to simply change chromosome names of a GRanges object?

Gerhard Thallinger ▴ 180

4 years ago

Austria

DNAStringSet(x, start=, end=) loses quality information

jarod ▴ 30

4 years ago

United States

STRINGdb images very low quality?

Jiping Wang ▴ 90

4 years ago

United States

not receive notification after successful push to bioconductor with version bump

Chise ▴ 10

4 years ago

United States

"Paired-end reads were detected in single-end read library"

S • 0

4 years ago

Norway

Adjust for base line gene expression in limma model

sergisayolspuig ▴ 80

4 years, 1 month ago

Spain

Bioinformatician/Bioinformatics position, IMB Mainz, Germany

thkapell ▴ 10

4 years, 1 month ago

Helmholtz Center Munich, Germany

Extract barcodes from all cells that belong to a scRNA-seq dataset neighborhood

Pietro ▴ 40

4 years, 1 month ago

Italy

velociraptor preparation

Levi Waldron ★ 1.1k

4 years, 1 month ago

CUNY Graduate School of Public Health a…

BioC2022 Seattle July 27-29 hybrid conference organizing committee

xiaofeiwang18266 ▴ 60

4 years, 1 month ago

Singapore

what the test method for enrichGO in clusterProfiler?

k___ ▴ 30

4 years, 1 month ago

United Kingdom

small RNA counts

Ahdee ▴ 60

4 years, 1 month ago

United States

How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?

jon.klonowski ▴ 40

4 years, 1 month ago

United States

Splitting a TxDB or GRanges by Chromosome

altintas.ali • 0

4 years, 1 month ago

Denmark

Filtering low coverage RRBS counts results in few reads. Any alternatives?

Tyler Sagendorf ▴ 10

4 years, 1 month ago

United States

limma-trend and voom results do not agree

Bine ▴ 50

4 years, 1 month ago

DESEQ2 Results log2fold and pvalue changes after removing genes

BT ▴ 10

4 years, 1 month ago

Sweden

Can I use VST on TPM data? (DESeq2)

synat.keam • 0

4 years, 1 month ago

Australia

How to choose singed or unsigned network in step-by-step WGCNA

array chip ▴ 420

4 years, 1 month ago

United States

GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")

Bine ▴ 50

4 years, 1 month ago

padjust after running DESEQ2

Robert Ivanek ▴ 750

4 years, 1 month ago

Switzerland

Postdoctoral Position in Bioinformatics to study Gene Regulatory Networks (University of Basel, Basel, Switzerland)

adR ▴ 40

4 years, 2 months ago

Germany, München

normalizing EXOM-seq read using DESeq2

Question1 • 0

4 years, 2 months ago

Germany

Too many genes in GO term after enrichGO

altintas.ali • 0

4 years, 2 months ago

Denmark

Multi-level design RRBS analysis with voomLmFit

pouryany • 0

4 years, 2 months ago

United States

Coding Style for BioC Package submissions: camelCaps or snake_case?

Angelos Armen • 0

4 years, 2 months ago

United Kingdom

Block weights in scran::pairwiseTTests

RobKo ▴ 10

4 years, 2 months ago

Netherlands

XVector installation fails because zlib.h is not found

jianhai.zhang • 0

4 years, 2 months ago

United States

More than 3 dimensions in runTSNE

bioinformaticssrm2011 • 0

4 years, 2 months ago

Norway

edgeR shows different results for same dataset

Stephanie M. Gogarten ▴ 890

4 years, 2 months ago

University of Washington

Error "unauthorized" in avtable_import

hemantcnaik • 0

4 years, 2 months ago

India

scran computeSumFactors showing error

hauken_heyken ▴ 80

4 years, 2 months ago

Bergen

S4Vectors, strange metadata behavior

ATpoint ★ 5.0k

4 years, 2 months ago

Germany

biomaRt connection error

synat.keam • 0

4 years, 2 months ago

Australia

Understanding output of Negative Binomial in DESeq2

lessismore ▴ 20

4 years, 2 months ago

Italy

DESeqDataSetFromMatrix gives a 'dimnames are not identical error' in R 4.0 that worked fine in R 3.6.1.

bioinformaticssrm2011 • 0

4 years, 2 months ago

Norway

Complex Contrast in DESeq2

alexw • 0

4 years, 2 months ago

Canada

Error when using summarizeToGene with tximeta input for DESeq2 analysis

chase.mateusiak • 0

4 years, 2 months ago

United States

rtracklayer can't access hg38 on UCSC?

k___ ▴ 30

4 years, 2 months ago

United Kingdom

FeatureCounts

Gerhard Thallinger ▴ 180

4 years, 2 months ago

Austria

affycoretools - include percent variance explained in plotPCA()

Assa Yeroslaviz ★ 1.5k

4 years, 2 months ago

Germany

lfcshrink() with no coef in resultsNames()

bioinformaticssrm2011 • 0

4 years, 2 months ago

Norway

DESeq2: error while ploting figure

9,023 results • Page 15 of 181

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