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Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
3 hours ago • updated 2 hours ago
Patadù
▴ 10
0
votes
3
replies
60
views
error running enricher from clusterprofiler
clusterProfiler
cluster
updated 4 hours ago by
Guido Hooiveld
★ 4.0k • written 6 hours ago by
Yael
• 0
2
votes
3
replies
63
views
How to correctly adjust for gender in edgeR
design
glm
edgeR
updated 4 hours ago by
ATpoint
★ 4.1k • written 6 hours ago by
Guillermo
• 0
2
votes
1
reply
45
views
How to design DEXSeq formula for multiple variables
DEXSeq
updated 6 hours ago by
Alejandro Reyes
★ 1.9k • written 2 days ago by
Sara
• 0
0
votes
2
replies
51
views
Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2
timecoursedata
GeneExpression
updated 7 hours ago by
ATpoint
★ 4.1k • written 10 hours ago by
pangtaihin
• 0
0
votes
0
replies
18
views
Difference in Contrast in DiffBind
DiffBind
9 hours ago
zzrammal
• 0
1
vote
2
replies
65
views
Erroe when using makeOrgPackageFromNCBI()
AnnotationForge
11 hours ago • updated 7 hours ago
Patadù
▴ 10
10
votes
9
replies
1.8k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq
rnaseq
updated 10 hours ago by
Sara
• 0 • written 6.7 years ago by
Sylvain Foisy
▴ 80
0
votes
3
replies
74
views
Assymetric MA plot with no overall trend
DESeq2
DifferentialExpression
updated 7 hours ago by
Michael Love
42k • written 23 hours ago by
Kasper
• 0
1
vote
2
replies
73
views
Can log2cpm be used for proteomics data normalization?
metaMSdata
1 day ago • updated 1 hour ago
Daniel
• 0
0
votes
1
reply
45
views
Retrieving ceRNA data from the starBase or ENCORI Web API
microRNA
starBase
ceRNA
WebAPI
ENCORI
1 day ago • updated 10 minutes ago
Bhavya
• 0
0
votes
8
replies
426
views
Can I trust the differential expression analysis when the two groups overlap on the PCA?
DESeq2
pcaExplorer
updated 20 hours ago by
BioinfGuru
▴ 30 • written 1 day ago by
Eric Katagirya
• 0
1
vote
3
replies
202
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression
TimeCourse
timeOmics
edgeR
RNAseq
updated 19 hours ago by
Gordon Smyth
50k • written 1 day ago by
Ashley
• 0
4
votes
5
replies
293
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
9 days ago • updated 4 hours ago
Chris
▴ 10
1
vote
2
replies
200
views
Citation for edgeR user guide
edgeR
written 21 days ago by
k___
▴ 30
0
votes
2
replies
934
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 6 hours ago by
mariakenneth147
• 0 • written 17 months ago by
pharamac
• 0
4
votes
9
replies
3.1k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
updated 1 hour ago by
Yun
• 0 • written 5.2 years ago by
daniel.magnus.bader
▴ 50
17 results • Page
1 of 1
Recent ...
Replies
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Guido Hooiveld
★ 4.0k
FWIW: based on [previous posts][1] it is suggested to install like this: install.packages(pkgs="./org.Vdahliae.eg.db", repos=NULL, typ…
Votes
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Answer: How to design DEXSeq formula for multiple variables
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