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News:
List of Deprecated Packages for Bioc3.18
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10 months ago • updated 14 days ago
shepherl
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List of Deprecated Packages for Bioc3.19
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News:
European Bioconductor Conference 2023 planning
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updated 10 days ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
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[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
spatialLIBD
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News:
Bioconductor 3.19 is Released!
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shepherl
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Important Release 3.18 Freeze Announcment
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shepherl
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Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
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23 days ago
Wolfgang Huber
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News:
Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
8 days ago
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Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
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20 days ago
communication
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News:
TIDES USA 2024
flowBeads
14 days ago
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Bioconductor
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Maria Doyle
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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