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Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
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12 months ago
shepherl
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Nominations for Bioconductor 2023 Awards!
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13 months ago • updated 12 months ago
shepherl
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course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
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12 months ago
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BioC2023 abstract submission is now open!
presentation
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written 15 months ago by
Maria Doyle
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Join the Community Advisory Board -- upcoming elections -- deadline Today
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written 17 months ago by
shepherl
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Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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written 18 months ago by
Peter Hickey
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News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
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written 2.2 years ago by
shepherl
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[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
spatialLIBD
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written 4.2 years ago by
Leonardo Collado Torres
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News:
Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq
deseq2
proteomics
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News
written 5.2 years ago by
Laurent Gatto
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Final List of Deprecated Packages for Bioc3.7
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written 6.1 years ago by
shepherl
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Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
swbarnes2
★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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