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Bioconductor Long-term Contribution Award
Bioc2023
Bioconductor
Awards
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12 months ago
shepherl
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Nominations for Bioconductor 2023 Awards!
Awards
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Bioc2023
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13 months ago • updated 12 months ago
shepherl
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course - single-cell RNAseq data analysis with R and Bioconductor
Workshop
scRNAseq
12 months ago
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BioC2023 abstract submission is now open!
presentation
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written 15 months ago by
Maria Doyle
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Join the Community Advisory Board -- upcoming elections -- deadline Today
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written 17 months ago by
shepherl
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Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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written 18 months ago by
Peter Hickey
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News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
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written 2.2 years ago by
shepherl
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[Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv
spatialLIBD
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written 4.2 years ago by
Leonardo Collado Torres
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News:
Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq
deseq2
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transcriptomics
workshop
News
written 5.2 years ago by
Laurent Gatto
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Final List of Deprecated Packages for Bioc3.7
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written 6.1 years ago by
shepherl
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons
by
Ken C
• 0
Got you. Thanks again for your comments.
Comment: DESeq2- Mysterious interaction suppresses DEGs
by
shaunpeterson
• 0
Thanks so much for your comment. Yes, this makes sense to me, especially since the effect of the drug is subtle. But it raises a larger con…
Answer: ERROR; return code from pthread_create() is 22
by
James W. MacDonald
65k
Seems OK to me. ``` > dat <- ReadAffy() > dat AffyBatch object size of arrays=744x744 features (20 kb) cdf=HG-U219 (49386 affyids) …
Answer: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
65k
Unless you think the different lines or tissues will have very different within-group variances, you should just analyze together and make …
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
by
James W. MacDonald
65k
It appears that batch is orthogonal to the treatment, so you can just fit a batch effect in your model.
Votes
Answer: DESeq2- Mysterious interaction suppresses DEGs
Answer: Subsetting RNAseq data | voomaByGroup()
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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