Showing : ASpli • reset
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I am trying to detect alternative splicing.
ASpli
5 days ago Sebashish • 0
0
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0
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216
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Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
8 weeks ago vipul14 • 0
5
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6
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831
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ASpli checks fail on Linux due to missing dependency to statmod
ASpli
updated 8 months ago by 50k • written 8 months ago by ▴ 10
0
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1
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639
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Splicing analysis with ASpli package gives an error when I use binGenome function.
S4Vectors Aspli
updated 14 months ago by • 0 • written 15 months ago by • 0
0
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3
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3.3k
views
ASpli: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'sort': 'start' or 'end' canno…
ASpli
updated 7 months ago by • 0 • written 18 months ago by • 0
0
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0
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604
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ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli alterna AlternativeSplicing
2.2 years ago hamza_karakurt ▴ 50
6
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10
replies
1.7k
views
ASpli: jCounts() Error in av[at] <- a[at] : NAs are not allowed in subscripted assignments
ASpli
updated 2.6 years ago by • 0 • written 2.9 years ago by ▴ 20
0
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1
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1.6k
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ASpli: Error in h(simpleError(msg, call))
ASpli
updated 21 months ago by • 0 • written 2.7 years ago by • 0
1
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3
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1.0k
views
ASpli error message
ASpli
updated 2.2 years ago by ▴ 50 • written 3.0 years ago by ▴ 50
1
vote
11
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1.9k
views
Aspli: error with gbCounts
Aspli ASpli
3.1 years ago • updated 3.0 years ago jbono ▴ 10
0
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1
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789
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ASpli package function plotGenomicRegions fails in windows
ASpli plotGenomicRegions
updated 3.7 years ago by ▴ 50 • written 4.8 years ago by • 0
0
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1
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583
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function plotgenomicregions does not appear in the aspli package installed in windows
software error aspli plotgenomicregions windows
4.0 years ago joanmarquez21 • 0
3
votes
2
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1.0k
views
ASpli readCounts never ends!
aspli readCounts rna-seq alternative splicing AS
5.2 years ago fernandalpcosta ▴ 10
0
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0
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886
views
ASpli AsDiscover error
R alternative splicing ASpli AsDiscover
5.3 years ago abdul rawoof ▴ 60
0
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0
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934
views
ASpli Package: Problem with readCounts() function, no Junctions analysed.
rnaseq alternative splicing ASpli
5.4 years ago nicolas.guyon2 • 0
0
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0
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811
views
ASPLI (RNAseq AS) R package error
rnaseq ASPLI
5.8 years ago dina.hesham139 • 0
0
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0
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1.0k
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Running ASpli on R results in "Error: vector memory exhausted (limit reached?)"
aspli rstudio
5.9 years ago arphatak • 0
0
votes
1
reply
885
views
Splicing analysis with ASpli
ASpli
updated 6.1 years ago by ★ 1.5k • written 6.1 years ago by ▴ 30
2
votes
2
replies
1.4k
views
ASpli ERROR during the counting step
ASpli rnaseq
updated 6.1 years ago by ▴ 10 • written 6.4 years ago by ▴ 10
19 results • Page 1 of 1
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Replies
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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