Showing : Align • reset
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Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
2.7 years ago agamemnon • 0
0
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0
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1.1k
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SUBREAD Aligning reads with reference genome - Error in align The number of input file names is different from the number of output file names.
align Alignment subread
3.6 years ago saira • 0
2
votes
2
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2.0k
views
Rsubread doesn't output a .bai file
Rsubread align Alignment
updated 4.3 years ago by 53k • written 4.3 years ago by • 0
1
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5
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3.6k
views
Error: Input Files have different Amount of Reads
SubRead Align Subjunc
updated 5.3 years ago by 68k • written 5.3 years ago by • 0
0
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4
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1.9k
views
segfault "memory not mapped" using align from Rsubread
Rsubread align
5.6 years ago Joseph Fass ▴ 70
5
votes
6
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2.3k
views
Rsubread malloc(): memory corruption
Rsubread malloc align
updated 6.0 years ago by 53k • written 6.2 years ago by ▴ 90
5
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6
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2.1k
views
Improving the performance of the align function from Rsubread for old Roche454 reads
align rsubread roche454 rnaseq
updated 6.5 years ago by ★ 3.6k • written 6.5 years ago by ▴ 60
0
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9
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3.6k
views
mapping FASTQ files to single gene (fluorescent reporter)
rsubread alignment align
6.9 years ago A ▴ 60
1
vote
5
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2.3k
views
Error using Rsubread align: caugh segfault invalid permissions
rsubread align segfault
updated 9.4 years ago by ★ 3.6k • written 9.4 years ago by ▴ 10
0
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1
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2.0k
views
RSubread 0% mapping
rsubread mapping featurecounts align
9.9 years ago Jo ▴ 30
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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