Bioconductor Batch Correction

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2.0k

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scrna-seq integration batch correction

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by p.joshi ▴ 40

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1.5k

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methylation ComBat Linear models batch correction AIC

updated 5.4 years ago by Kevin Blighe ★ 4.0k • written 5.4 years ago by lucasmiranda42 • 0

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867

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DESeq2 batch correction

updated 5.5 years ago by James W. MacDonald 68k • written 5.5 years ago by MT ▴ 10

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1.2k

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Diffbind ATAC batch correction blocking factor

updated 5.8 years ago by Rory Stark ★ 5.2k • written 5.8 years ago by rm1238 • 0

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1.2k

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deseq2 differential expression batch correction design

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by wunderl ▴ 40

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1.8k

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deseq2 differential expression batch correction

updated 5.9 years ago by Michael Love 43k • written 5.9 years ago by wunderl ▴ 40

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2.3k

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SC3 Scater Scran scRNA-Seq Batch Correction

updated 6.1 years ago by Vladimir Kiselev ▴ 150 • written 6.1 years ago by hamza_karakurt ▴ 60

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Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

You neglected to add the code you use to generate the heatmap.

Answer: Error in readCodelinkSet function by James W. MacDonald 68k

Please don't cross-post to Biostars. Either post here or there, but not both.

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Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Answer: limma correction for tumor purity

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