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BigWig
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1.5k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
19 months ago • updated 16 months ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 20 months ago by
complaintguide
• 0 • written 20 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.3k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.3 years ago
bas_work
▴ 30
0
votes
5
replies
1.7k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.1 years ago
lsilva.m
• 0
0
votes
1
reply
1.6k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 6.6 years ago by
kaur.alasoo
▴ 30 • written 6.6 years ago by
borgmichael
• 0
3
votes
15
replies
3.0k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 6.8 years ago by
Michael Lawrence
★ 11k • written 6.8 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.2k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
zx8754
▴ 10
2
votes
3
replies
1.4k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.3k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.3 years ago by
laurent.lacroix
▴ 30 • written 8.3 years ago by
koneill
▴ 30
0
votes
2
replies
1.2k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
dborgesrmit
• 0
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Comment: Problem finding certain variables when importing a public database GSE73103
by
Guido Hooiveld
★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Votes
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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