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bigwig
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1.6k
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bigwig to counts
DESeq2
edgeR
bigwig
limma
21 months ago • updated 18 months ago
Bogdan
▴ 670
0
votes
2
replies
1.8k
views
converting bedgraph into bigwig
bedgraph
wiggleplotr
bigwig
wig
updated 23 months ago by
complaintguide
• 0 • written 23 months ago by
Bogdan
▴ 670
0
votes
1
reply
1.5k
views
'Negative' and 'Positive' bigWig RNAseq files: how to deal with these???
bigWig
RNASeqData
2.5 years ago
bas_work
▴ 30
0
votes
5
replies
1.8k
views
rtracklayer::import() BigWig issue on windows (solved)
software error
BigWig
import
windows
4.3 years ago
lsilva.m
• 0
0
votes
1
reply
1.7k
views
Plotting bigwig coverage over chromosomal coordinates with wiggleplotr
wiggleplotr
bigwig
coverage
ngs
updated 6.8 years ago by
kaur.alasoo
▴ 30 • written 6.8 years ago by
borgmichael
• 0
3
votes
15
replies
3.2k
views
(Big)wig file of complete chromosome
bigwig
rtracklayer
import
granges
grangeslist
updated 7.0 years ago by
Michael Lawrence
★ 11k • written 7.0 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
1
reply
1.2k
views
Strange first_time object in rtracklayer import
rtracklayer
bigwig
import
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
zx8754
▴ 10
2
votes
3
replies
1.4k
views
rtracklayer - export.bw bug
bigwig
rtracklayer
export.bw
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
story.benjamin
▴ 20
3
votes
9
replies
2.4k
views
export.bw produces enormous files (10^5 times bigger than they should be)
rtracklayer
bigwig
updated 8.5 years ago by
laurent.lacroix
▴ 30 • written 8.5 years ago by
koneill
▴ 30
0
votes
2
replies
1.3k
views
Rtracklayer creating large temp files when importing BigWigs
rtracklayer
BigWig
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
dborgesrmit
• 0
10 results • Page
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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42k
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★ 1.1k
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