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bioc
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can't update bioconductor 3.18
BioCor
bioc
BiocVersion
6 months ago
feifan
• 0
1
vote
2
replies
643
views
News:
Win 1 of 50 free virtual registrations to BioC Asia 2022 (Dec 1-2, 2022)
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BioCAsia
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BioC
written 17 months ago by
Peter Hickey
▴ 740
0
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1
reply
804
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JAVA_HOME cannot be determined on Windows on Bioconductor platform report
bioc
Bioconductor
updated 2.5 years ago by
Hervé Pagès
16k • written 2.5 years ago by
cannin
▴ 20
0
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1
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1.9k
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Multiple R versions
R
bioc
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
pawan12394
• 0
0
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5
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1.7k
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BioC happening in 2018?
BioC
2018
Course
6.7 years ago
s.munster
▴ 40
0
votes
1
reply
1.5k
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Errors installing RforProteomics
Bioc
package installation
rforproteomics
updated 8.1 years ago by
Laurent Gatto
1.6k • written 8.1 years ago by
sarahgrogan
• 0
6 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
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Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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