Bioconductor Bowtie

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noiseq rsubread tophat bowtie bowtie2

6.3 years ago Marcelo Laia ▴ 450

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Bowtie quasr rnaseq

updated 9.7 years ago by Dario Strbenac ★ 1.6k • written 9.7 years ago by tarek.mohamed ▴ 10

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deseq deseq2 edger tophat bowtie

10.3 years ago ysdel ▴ 40

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r bowtie

updated 10.3 years ago by Sean Davis 21k • written 10.3 years ago by a.afshinfard ▴ 10

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Answer: DiffBind - question on the use of filtered or unfiltered input data by vejogos850 • 0

DiffBind - question on the use of filtered or unfiltered input data is the best to deal with, and it provides us the solutions that we are …

Answer: Help with defining groups by Gordon Smyth 53k

Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…

Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760

The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi by ReinholdGaylord99 • 0

Thank you so much! https://www.nature.com/articles/s41467-021-25960-2/ [geometry dash lite](https://geometrydashlite.online)

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

I'm not sure that I understand. You have a dataset that, even after pseudo-bulking, still has 6000 samples? That is surprising. Retaining …

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Comment: readDNAStringSet with non DNA characters

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design

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