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Bugs
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reset
0
votes
11
replies
1.6k
views
limma::contrast.fit() potential bugs when weights from voom() included
bugs
limma
20 months ago
Zhenyu
• 0
0
votes
2
replies
1.6k
views
AffyBatch and ArrayExpress
arrayexpress
affy
bugs
updated 6.2 years ago by
James W. MacDonald
66k • written 6.2 years ago by
Ed Siefker
▴ 230
5
votes
16
replies
2.3k
views
GSVA package scores are opposite on mac and windows
GSVA
bug
gsva
bugs
updated 6.6 years ago by
Robert Castelo
★ 3.3k • written 6.6 years ago by
JasonL_Weirather
▴ 10
0
votes
1
reply
1.1k
views
bug in dba.overlap (dba.plotVenn)
DiffBind
bugs
updated 7.0 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
jeremydt
• 0
2
votes
3
replies
1.5k
views
A bug of "seqlevels<-" on TxDb
txdb.hsapiens.ucsc.hg19.knowngene
seqlevels
bugs
updated 7.5 years ago by
Hervé Pagès
16k • written 7.5 years ago by
wcstcyx
▴ 30
5
votes
2
replies
1.3k
views
AnnotationHub: two broad peaks from same url are not the same
annotationhub
bugs
encode
bed
7.5 years ago
wcstcyx
▴ 30
0
votes
0
replies
1.1k
views
Bugs for impute package
bugs
impute
7.7 years ago
Shicheng Guo
• 0
0
votes
4
replies
1.7k
views
DESeq2 contrast cleaning problem
software error
bugs
deseq2
updated 8.3 years ago by
Michael Love
42k • written 8.3 years ago by
john.hu
• 0
0
votes
0
replies
1.5k
views
error: no slot of name "expressionFamily" for this object of class "CellDataSet"
monocle
bugs
8.5 years ago
wanghao1993333
• 0
0
votes
2
replies
1.6k
views
x-axis ticks are misaligned in ggbio tracks
ggbio
bugs
tracks
autoplot
9.3 years ago
cooketho
• 0
4
votes
3
replies
1.5k
views
arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics
bugs
error
updated 9.6 years ago by
James W. MacDonald
66k • written 9.6 years ago by
daugherty_a
• 0
0
votes
4
replies
2.1k
views
DESeq2 more differentially expressed genes
Bugs
deseq2
updated 9.7 years ago by
Michael Love
42k • written 9.7 years ago by
lmf.bill@gmail.com
▴ 10
0
votes
0
replies
1.4k
views
ggbio() + geom_alignment has stopped working
Bugs
ggbio
9.7 years ago
Anne Deslattes Mays
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Guido Hooiveld
★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Comment: Error in render R qmd document (could not find function "process")
by
ATpoint
★ 4.2k
This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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Robert Castelo
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kevin.rue
▴ 350
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Wei Shi
★ 3.6k
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Gordon Smyth
50k
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jovel_juan
▴ 30
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