Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
CAGEr
•
reset
9
votes
18
replies
2.3k
views
bam2CTSS function error from CAGEr package
cager
5.6 years ago
Pengcheng Yang
▴ 60
6
votes
8
replies
1.2k
views
CAGEr bug report: wrong consensus cluster results
CAGEr
updated 10 months ago by
Charles Plessy
▴ 180 • written 17 months ago by
Meng
▴ 30
2
votes
8
replies
2.0k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 6.8 years ago by
Charles Plessy
▴ 180 • written 6.9 years ago by
orzechowska.mag
▴ 10
1
vote
6
replies
1.3k
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager
cage
ctss
updated 4.0 years ago by
Charles Plessy
▴ 180 • written 4.9 years ago by
sarac
▴ 20
4
votes
6
replies
1.2k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
4.0 years ago
mirkocelii
▴ 40
2
votes
5
replies
1.3k
views
Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering
tag per million
tag counts
CAGEr
updated 2.5 years ago by
Charles Plessy
▴ 180 • written 5.0 years ago by
regcastillo1990
• 0
4
votes
5
replies
2.1k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 2.7 years ago by
jingxian.18
• 0 • written 8.3 years ago by
Vivek.b
▴ 100
0
votes
5
replies
1.1k
views
CAGEr promoter width graph
CAGEr
updated 2.7 years ago by
Charles
• 0 • written 3.7 years ago by
leehami7407
• 0
4
votes
5
replies
1.2k
views
no import.bam function in CAGEr version 1.22.3
cager
5.6 years ago
Pengcheng Yang
▴ 60
1
vote
4
replies
857
views
CAGEr quantilePositions() takes forever to run
CAGEr
quantilePositions
4.0 years ago
mirkocelii
▴ 40
1
vote
3
replies
860
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
4.0 years ago
mirkocelii
▴ 40
0
votes
3
replies
973
views
CAGEr: Problem when running getCTSS
CAGEr
updated 2.6 years ago by
Charles Plessy
▴ 180 • written 2.7 years ago by
Sergio
• 0
1
vote
2
replies
1.3k
views
error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
5.6 years ago
Pengcheng Yang
▴ 60
1
vote
2
replies
841
views
CAGEexp vs CAGErseq
CAGEr
updated 2.6 years ago by
Charles Plessy
▴ 180 • written 3.1 years ago by
MatteoP
▴ 10
0
votes
1
reply
915
views
a problem from import CTSStable in CAGEr
cager
CAGEr
5.5 years ago
Zhong JW
• 0
0
votes
1
reply
1.1k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN
CAGEr
BRAIN
CAGEr
updated 6.1 years ago by
Charles Plessy
▴ 180 • written 9.8 years ago by
Tobias Hohenauer
▴ 10
0
votes
1
reply
1.1k
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 9.3 years ago by
James W. MacDonald
66k • written 9.3 years ago by
calibula2000
• 0
1
vote
1
reply
1.0k
views
clusterCTSS() error when running CAGEr
CAGEr
updated 6.6 years ago by
Charles Plessy
▴ 180 • written 6.6 years ago by
bo_yan
▴ 10
1
vote
1
reply
888
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
6.0 years ago
Jingwen
▴ 10
0
votes
0
replies
480
views
CAGEr consensusClustersDESeq2()
CAGEr
3.1 years ago
MatteoP
▴ 10
0
votes
0
replies
917
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
5.5 years ago
bharata1803
▴ 60
21 results • Page
1 of 1
Recent ...
Replies
Comment: recount3 problem downloading data from source sra
by
PABLO ANTONIO
• 0
Hello Leonardo, Thanks for commenting on possible solutions. I noticed comparing your session info that I was using the previous version o…
Comment: seqlevelsStyle() not working
by
websterdelacruz2087055
• 0
Specify the new URL new_url <- "https://hgdownload2.cse.ucsc.edu/goldenPath/hg19/database/chromInfo.txt.gz" Use the new URL to download th…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Yes, thank you. I have another error now, may you please guide me. here is the code that I used till using vep: ```r # bam_path <- "~/pat…
Comment: slingshot: error with plot3d.SlingshotDataSet
by
Happiness
• 0
Hi please i am encountering similar issue how did you fix it. Here is the code: ## Run Slingshot p3.neuron.sds <- slingshot(Embeddings(…
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
by
mohammedtoufiq91
▴ 10
https://support.bioconductor.org/u/5106/ thank you very much.
Votes
Answer: recount3 problem downloading data from source sra
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Awards
• All
Scholar
to
Mike Smith
★ 6.5k
Popular Question
to
mohammedtoufiq91
▴ 10
Popular Question
to
Gordon Smyth
50k
Popular Question
to
bas_work
▴ 30
Popular Question
to
landenshanie
▴ 40
Locations
• All
Germany,
just now
Japan,
1 minute ago
Germany,
3 minutes ago
Greece,
5 minutes ago
Denmark,
11 minutes ago
Traffic: 893 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6