Bioconductor CATALYST

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CATALYST

updated 11 months ago by Hervé Pagès 16k • written 11 months ago by Hyoann ▴ 20

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1.4k

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CATALYST cytofWorkflow

updated 4.4 years ago by Martin Morgan 25k • written 4.4 years ago by Brent.OCarrigan • 0

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1.1k

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CATALYST

21 months ago David • 0

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1.0k

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CATALYST SingleCellExperiment

updated 3.3 years ago by helucro ▴ 70 • written 3.4 years ago by achaillon • 0

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971

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CATALYST flowCore assignPrelim Error in vapply read.FCS

5.2 years ago j.krop • 0

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620

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CATALYST

updated 9 months ago by SamGG ▴ 350 • written 20 months ago by David • 0

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397

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CATALYST

13 months ago Shaun • 0

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220

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visua Visualization CATALYST

4 months ago elefth.pavlos ▴ 40

8 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0