Showing : CDF • reset
0
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3
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1.4k
views
trouble using GCRMA
Yeast cdf gcrma Yeast cdf gcrma
updated 18.3 years ago by ▴ 200 • written 18.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Affy Human Gene ST1.0 cdf
Annotation cdf Annotation cdf
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 500
0
votes
0
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1.1k
views
Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
18.3 years ago lidaof ▴ 450
0
votes
3
replies
1.7k
views
limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 450
0
votes
0
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1.2k
views
Normalization of 2 color Nimblegen array
cdf affy affyPLM convert oligo makePlatformDesign cdf affy affyPLM convert oligo
18.3 years ago dhruv pant ▴ 30
0
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6
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1.5k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 18.3 years ago by 68k • written 18.3 years ago by ★ 1.3k
0
votes
3
replies
2.0k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
18.3 years ago Salim Charaniya ▴ 20
0
votes
0
replies
985
views
problem with hyperGTest function
GO Cancer cdf GOstats GO Cancer cdf GOstats
18.3 years ago Seth Falcon ★ 7.4k
0
votes
3
replies
1.4k
views
Affy normalization with custom chip.
cdf affy cdf affy
updated 18.3 years ago by ★ 2.2k • written 18.3 years ago by ▴ 70
0
votes
2
replies
735
views
QCReport problem
cdf cdf
updated 18.3 years ago by 68k • written 18.4 years ago by ▴ 10
0
votes
9
replies
2.4k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 80
0
votes
6
replies
1.9k
views
mas5 update.default problem
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 190
0
votes
0
replies
811
views
(no subject)
hgu95av2 cdf affy affyio hgu95av2 cdf affy affyio
18.4 years ago David Ruau ▴ 190
0
votes
0
replies
1.1k
views
simpleaffy problem - drosophila2
drosophila2 cdf affy affydata simpleaffy drosophila2 cdf affy affydata simpleaffy
18.4 years ago Yihuan Xu ▴ 130
0
votes
9
replies
2.5k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ★ 2.2k
0
votes
1
reply
1.1k
views
simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 18.4 years ago by ★ 1.1k • written 18.4 years ago by ▴ 510
0
votes
1
reply
917
views
RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 18.4 years ago by 25k • written 18.4 years ago by ▴ 110
0
votes
2
replies
1.2k
views
Nimblegen data analysis
GO cdf affy oligo GO cdf affy oligo
updated 18.4 years ago by ▴ 140 • written 18.4 years ago by ★ 2.2k
0
votes
4
replies
2.2k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.4 years ago by ★ 1.2k • written 18.4 years ago by ▴ 30
0
votes
1
reply
1.4k
views
paired design, LIMMA
cdf tkWidgets affy widgetTools limma affyio cdf tkWidgets affy widgetTools limma affyio
updated 18.4 years ago by ▴ 470 • written 18.4 years ago by 53k
0
votes
1
reply
1.2k
views
RMA error on exon arrays
Normalization Breast cdf probe PROcess Normalization Breast cdf probe PROcess
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 500
0
votes
1
reply
758
views
error getting CDF
cdf gcrma cdf gcrma
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 20
0
votes
5
replies
1.5k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 18.5 years ago by ★ 6.5k • written 18.5 years ago by ▴ 830
0
votes
3
replies
939
views
Affymetrix Tiling arrays
cdf cdf
18.5 years ago Alessandro Ferrantini ▴ 30
0
votes
0
replies
1.3k
views
affy u133x3p chip
Microarray Genetics GO Preprocessing Cancer CGH cdf probe annotate genefilter affy RBGL
18.5 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
614
views
ANN:xy2i and i2xy to be deprecated
Microarray Cancer cdf affy Microarray Cancer cdf affy
18.5 years ago James W. MacDonald 68k
0
votes
1
reply
766
views
combineAffyBatch problem
cdf affy cdf affy
updated 18.6 years ago by ★ 13k • written 18.6 years ago by ▴ 10
0
votes
1
reply
1.1k
views
weird problem with ReadAffy and makecdfenv'd CDF package
cdf cdf
updated 18.6 years ago by 68k • written 18.6 years ago by ▴ 160
0
votes
4
replies
1.6k
views
metadata for Affymetrix Poplar array
Annotation cdf Annotation cdf
updated 18.6 years ago by ▴ 870 • written 18.6 years ago by ★ 1.4k
0
votes
3
replies
1.7k
views
webbioc chicken
Microarray cdf probe multtest affy webbioc Microarray cdf probe multtest affy webbioc
updated 18.6 years ago by ▴ 870 • written 18.6 years ago by ▴ 20
0
votes
1
reply
1.4k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.6 years ago by 21k • written 18.6 years ago by ▴ 60
0
votes
3
replies
1.4k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.6 years ago by ★ 1.1k • written 18.7 years ago by ▴ 270
0
votes
0
replies
1.2k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf probe genefilter affy simpleaffy affyQCReport cdf probe genefilter affy simpleaffy
18.7 years ago Wu, Xiwei ▴ 350
0
votes
1
reply
1.4k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation GO cdf DynDoc genefilter tkWidgets affy graph limma RBGL biomaRt Category
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 300
0
votes
4
replies
1.8k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.7 years ago by ★ 13k • written 18.7 years ago by ▴ 830
0
votes
0
replies
1.2k
views
Analysis with MBNI re-mapped (custom) CDF files
Microarray Clustering cdf probe affy affyPLM mmgmos Microarray Clustering cdf probe
18.7 years ago Richard Pearson ▴ 390
0
votes
1
reply
1.5k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.7 years ago by 68k • written 18.7 years ago by ▴ 320
0
votes
0
replies
879
views
Bioconductor Digest, Vol 47, Issue 26
GO cdf probe affy gcrma PROcess convert GO cdf probe affy gcrma PROcess convert
18.7 years ago Manhong Dai ▴ 200
0
votes
2
replies
1.1k
views
Loading multiple Affy chips simultaneously
GO cdf gcrma GO cdf gcrma
18.7 years ago Paul Boutros ▴ 340
0
votes
4
replies
1.9k
views
Problems with the size of the plots obtained with AffyPLM
cdf affy gcrma affyPLM affyio cdf affy gcrma affyPLM affyio
updated 18.7 years ago by ▴ 550 • written 18.7 years ago by ▴ 350
0
votes
0
replies
819
views
[Bioc] Removing outlier/masked probes and gcRMA
cdf affy gcrma cdf affy gcrma
18.7 years ago Amy Mikhail ▴ 460
0
votes
1
reply
890
views
Arabidopsis tiling arrays
cdf cdf
updated 18.7 years ago by ★ 4.3k • written 18.7 years ago by ▴ 10
0
votes
4
replies
1.6k
views
gcrma with bpmap file instead of cdf file
cdf gcrma cdf gcrma
18.7 years ago Baoqiang Cao ▴ 30
0
votes
2
replies
1.6k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 18.7 years ago by ▴ 160 • written 18.7 years ago by ▴ 50
0
votes
0
replies
1.0k
views
Modified qc.affy code for chip type: soybeancdf
Cancer cdf Cancer cdf
18.8 years ago Alvord, Greg DMS [Contr] ▴ 160
0
votes
0
replies
1.1k
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.8 years ago Charlyn Suarez ▴ 10
0
votes
2
replies
1.9k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 890
0
votes
3
replies
1.9k
views
ExpressionSet, fitPLM confusion
cdf probe gcrma matchprobes affyPLM affyio cdf probe gcrma matchprobes affyPLM affyio
updated 18.8 years ago by ★ 13k • written 18.8 years ago by ▴ 510
0
votes
4
replies
1.5k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.8 years ago by 25k • written 18.8 years ago by ★ 13k
0
votes
4
replies
1.3k
views
GCRMA with HG-U95A and HG-U95Av2
Normalization cdf gcrma Normalization cdf gcrma
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 10
927 results • Page 11 of 19
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Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
Comment: Sharing a collection of datasets in ExperimentHub by Aaron Lun ★ 29k
FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
Comment: Error Loading Experiment from SimBenchData Package by ATpoint ★ 4.9k
Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
Answer: Help with defining groups by Gordon Smyth 53k
Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
Comment: Sharing a collection of datasets in ExperimentHub by Peter Hickey ▴ 760
The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
Votes
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Answer: ordinary t from limma [was: How would I normally compare swirl?]
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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