Showing : CDF • reset
0
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966
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How to remove some probes from one probeset in the begining?
cdf probe cdf probe
17.6 years ago pkuonline ▴ 30
0
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1
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1.3k
views
Normalizing two different platforms
cdf affy gcrma cdf affy gcrma
updated 17.6 years ago by ★ 6.5k • written 17.6 years ago by ▴ 80
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1
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982
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gcrma with hgu133a and hgu133a2
cdf probe gcrma cdf probe gcrma
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 40
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3
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1.2k
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Problem with setQCEnvironment
cdf affy cdf affy
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 40
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1
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1.3k
views
Help needed with aroma.affymetrix package to extract copy-numbers
Normalization cdf GLAD Normalization cdf GLAD
updated 17.6 years ago by ★ 2.4k • written 17.6 years ago by ▴ 270
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0
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1.2k
views
RMA, d-chip and Plier for new chip type Human/Mouse/Rat Gene 1.0 ST Array
Microarray cdf probe affy convert Microarray cdf probe affy convert
17.6 years ago Fang, Hong* ▴ 30
0
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1
reply
796
views
Restore lost mm probes in an altcdfenv?
cdf probe cdf probe
updated 17.6 years ago by ▴ 950 • written 17.6 years ago by ▴ 10
0
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0
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986
views
EBImage installation error
cdf EBImage cdf EBImage
17.6 years ago Klaus-Peter Pleissner ▴ 70
0
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1
reply
1.2k
views
transferring AffyBatch object and 64 bit R
cdf affy cdf affy
updated 17.7 years ago by ▴ 730 • written 17.7 years ago by ▴ 90
0
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4
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1.2k
views
MBNI CDF
cdf cdf
updated 17.7 years ago by 68k • written 17.7 years ago by ▴ 310
0
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3
replies
1.5k
views
arrayQualityMetrics
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 17.8 years ago by ▴ 280 • written 17.8 years ago by ▴ 270
0
votes
1
reply
913
views
Affy Human Gene ST1.0 cdf?
cdf cdf
updated 17.8 years ago by 68k • written 17.8 years ago by ▴ 320
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0
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1.2k
views
Oligo package and tiling arrays - PM and MM
cdf affyio oligo BufferedMatrix cdf affyio oligo BufferedMatrix
17.9 years ago Naira Naouar ▴ 140
0
votes
3
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2.1k
views
CDF for Mouse gene 1.0 ST
cdf cdf
updated 17.9 years ago by ★ 2.4k • written 17.9 years ago by ▴ 320
0
votes
1
reply
972
views
unclear on error in affxparser
cdf affxparser cdf affxparser
updated 17.9 years ago by ★ 6.5k • written 17.9 years ago by ▴ 210
0
votes
2
replies
981
views
modify CDF file for array study
cdf probe affy ASSIGN cdf probe affy ASSIGN
updated 17.9 years ago by ▴ 120 • written 17.9 years ago by ▴ 10
0
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0
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993
views
makePDpackage: Problem loading PD package in, oligo:read.celfiles function
cdf oligo cdf oligo
17.9 years ago Matt Settles ▴ 10
0
votes
1
reply
1.2k
views
QC Parameter File error
cdf cdf
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 160
0
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2
replies
903
views
hugene10stv1probe?
cdf probe cdf probe
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 50
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0
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1.4k
views
AffyExpress: AffyQA incompatible with simpleaffy 2.14.04?
cdf simpleaffy AffyExpress cdf simpleaffy AffyExpress
18.0 years ago Stefan Thomsen ▴ 50
0
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1
reply
1.6k
views
simpleaffy 2.14.02, setQCEnvironment
cdf simpleaffy ASSIGN cdf simpleaffy ASSIGN
updated 18.0 years ago by ★ 1.1k • written 18.0 years ago by ▴ 50
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1
reply
1.1k
views
request for simple usage of probe level normalisations
cdf gcrma oligo pdInfoBuilder cdf gcrma oligo pdInfoBuilder
updated 18.0 years ago by ★ 6.5k • written 18.0 years ago by ▴ 320
0
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5
replies
1.2k
views
Making a PD package for Oligo
cdf oligo makePlatformDesign cdf oligo makePlatformDesign
updated 18.0 years ago by ★ 4.3k • written 18.0 years ago by ▴ 40
0
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3
replies
1.1k
views
Arabidopsis thaliana cdf ath1121501
cdf cdf
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 140
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0
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1.3k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
18.0 years ago Richard Friedman ★ 2.0k
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0
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1.0k
views
problem running dev version of GCRMA
hgu133plus2 cdf Biobase affy affyio hgu133plus2 cdf Biobase affy affyio
18.0 years ago Martin Morgan 25k
0
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1
reply
1.3k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 18.0 years ago by ★ 1.2k • written 18.0 years ago by ★ 2.4k
0
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1
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1.0k
views
GCRMA works for my updated cdf and probesequence files.
cdf probe gcrma cdf probe gcrma
updated 18.1 years ago by ▴ 450 • written 18.1 years ago by ▴ 130
0
votes
1
reply
889
views
help for canine 2.0 arrays
cdf affy cdf affy
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 10
0
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0
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1.3k
views
gcrma problem caused by using updated new CDF and probesequence?
Normalization hgu133a hgu95a cdf probe affy gcrma PROMISE Normalization hgu133a hgu95a
18.1 years ago Yan Zhang ▴ 130
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2
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1.1k
views
affTableAnn error
hgu133a2 moe430a mouse430a2 cdf limma matchprobes hgu133a2 moe430a mouse430a2 cdf limma
updated 18.1 years ago by ★ 7.4k • written 18.1 years ago by ★ 2.0k
0
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0
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960
views
how to install updated CDF package and probe package in R to run GCRMA?
cdf probe gcrma cdf probe gcrma
18.1 years ago Yan Zhang ▴ 130
0
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3
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2.6k
views
ReadAffy Error
Annotation ExperimentData cdf affy affyio Annotation ExperimentData cdf affy affyio
updated 18.1 years ago by ▴ 60 • written 18.1 years ago by ▴ 380
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4
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1.7k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 20
0
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6
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4.0k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
updated 18.1 years ago by ▴ 220 • written 18.1 years ago by ★ 2.2k
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0
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2.1k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
18.1 years ago Min Wook Kim ▴ 20
0
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1
reply
1.2k
views
error in maanova matest() with affymetrix
cdf affy maanova affyio cdf affy maanova affyio
updated 18.1 years ago by 68k • written 18.1 years ago by ▴ 510
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3
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1.8k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 18.1 years ago by ★ 7.4k • written 18.1 years ago by ▴ 10
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7
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2.0k
views
Problems with affycomp - quantile.default
cdf affy affycomp affyio cdf affy affycomp affyio
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 380
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1
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1.5k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 18.2 years ago by ▴ 450 • written 18.2 years ago by ▴ 450
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2
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1.6k
views
How to get probeset ID
rae230a cdf affy gcrma matchprobes rae230a cdf affy gcrma matchprobes
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 310
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2
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1.8k
views
Using a custom CDF file
cdf cdf
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 120
0
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1
reply
1.5k
views
Problems with expresso
Preprocessing cdf affy affyio Preprocessing cdf affy affyio
updated 18.2 years ago by 25k • written 18.2 years ago by ▴ 380
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2
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842
views
Bug in probeNames()
Annotation cdf Annotation cdf
updated 18.2 years ago by ▴ 950 • written 18.2 years ago by ▴ 630
0
votes
3
replies
1.2k
views
Problems with gcrma using latest version of R and Bioconductor
Normalization cdf gcrma Normalization cdf gcrma
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 60
0
votes
2
replies
1.4k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 18.2 years ago by ▴ 50 • written 18.2 years ago by ▴ 290
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votes
5
replies
2.3k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 18.2 years ago by 68k • written 18.2 years ago by ▴ 50
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votes
0
replies
1.3k
views
Return of "I'm sorry, I do not know about chip type (foo)"
Survival cdf affydata limma gcrma matchprobes affyPLM simpleaffy Survival cdf affydata
18.2 years ago Dave Jacoby ▴ 20
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9
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2.4k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 18.3 years ago by 68k • written 18.3 years ago by ▴ 90
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1
reply
1.1k
views
hgu133a and gnGNF1Ba
Microarray Annotation hgu133a cdf Biobase affy PROcess Microarray Annotation hgu133a cdf
updated 18.3 years ago by ▴ 830 • written 18.3 years ago by ★ 3.4k
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Comment: incomplete imputation of missing values with LEA impute() function by Gordon Smyth 53k
Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
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FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
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Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
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Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
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The [**scRNAseq**](https://bioconductor.org/packages/scRNAseq/) package ([source on GitHub](https://github.com/LTLA/scRNAseq)) might serve …
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Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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