Showing : Cancer • reset
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882
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how to get the first hit in each sequence from vmatchPattern results
Cancer Cancer
updated 12.9 years ago by ★ 2.0k • written 12.9 years ago by 16k
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0
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4.9k
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ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
13.0 years ago SSc Array Core ▴ 10
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1.3k
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flowCore/read.FCS issue
Cancer flowCore Cancer flowCore
13.0 years ago Jiang, Mike ★ 1.3k
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0
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902
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regarding to flowCore/read.FCS warning message
Cancer flowCore Cancer flowCore
13.0 years ago Jiang, Mike ★ 1.3k
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1.1k
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Workshop on Statistical Genomics and Data Integration for Personalized Medicine
Cancer Cancer
13.0 years ago Darlene Goldstein ▴ 230
0
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13
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2.4k
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Limma; a kind of extended paired analyses with or without treatment
Cancer Cancer
13.0 years ago john herbert ▴ 560
0
votes
1
reply
670
views
can I use alignment utilities (mismatchTable, etc) on externally-generated alignments?
Alignment Cancer Alignment Cancer
updated 13.0 years ago by ★ 11k • written 13.0 years ago by ▴ 740
0
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4
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2.5k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 13.0 years ago by 16k • written 13.0 years ago by ▴ 100
0
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3
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1.7k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 13.0 years ago by 16k • written 13.0 years ago by ▴ 100
0
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0
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776
views
Fwd: DESeq plotting graphs.
Cancer DESeq Cancer DESeq
13.0 years ago Steve Lianoglou ★ 13k
0
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1
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2.1k
views
Bioconductor Digest, Vol 115, Issue 22
Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 10
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2.5k
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Open-rank faculty position, Dept of Biostatistics, Virginia Commonwealth University
Sequencing Cancer Sequencing Cancer
13.1 years ago Kellie J. Archer, Ph.D. ▴ 120
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1.3k
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PostDoctoral position - Deadline is approaching
Genetics Cancer Leukemia Genetics Cancer Leukemia
13.1 years ago RNDr. Martin Pospíšek, Ph.D. ▴ 10
0
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870
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Course Announcement: Advanced R / Bioconductor Programming, Oct. 15-16, Seattle, WA
Cancer Cancer
13.1 years ago Martin Morgan 25k
0
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1
reply
2.9k
views
Integer overflow when summing an 'integer' Rle
Coverage GO Cancer convert IRanges Coverage GO Cancer convert IRanges
updated 13.1 years ago by ★ 1.2k • written 13.1 years ago by ★ 6.8k
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0
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1.4k
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regarding mapping package
Cancer genomes Rsubread gmapR Cancer genomes Rsubread gmapR
13.1 years ago Martin Morgan 25k
0
votes
0
replies
904
views
pdmClass plot error
Cancer Cancer
13.1 years ago Martin Morgan 25k
0
votes
1
reply
1.1k
views
nearest for GRanges ignoring overlapping ranges
Cancer IRanges GenomicRanges Cancer IRanges GenomicRanges
updated 13.1 years ago by ★ 6.8k • written 13.1 years ago by ▴ 740
0
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13
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2.4k
views
Where to get BAM files for easyRNASeq human use case
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 13.2 years ago by ★ 1.2k • written 13.2 years ago by ★ 2.0k
0
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8
replies
2.4k
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good news and bad news
Infrastructure Cancer IRanges GenomicRanges Infrastructure Cancer IRanges GenomicRanges
updated 13.2 years ago by ★ 13k • written 13.2 years ago by 16k
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1
reply
821
views
useDevel and update all packages - wrong library location?
Cancer Cancer
updated 13.2 years ago by 25k • written 13.2 years ago by ▴ 740
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0
replies
1.2k
views
Job openings: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital
Sequencing Microarray Cancer Sequencing Microarray Cancer
13.2 years ago Wittner, Ben ▴ 290
0
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2
replies
1.3k
views
on PWM in biostrings
Cancer Cancer
updated 13.2 years ago by ▴ 60 • written 13.2 years ago by 16k
0
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1
reply
1.7k
views
PDict in GenomicRanges
Preprocessing Cancer Preprocessing Cancer
13.2 years ago Hervé Pagès 16k
0
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0
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1.7k
views
Package announcement: bsseq
Sequencing Alignment Cancer Colon bsseq Sequencing Alignment Cancer Colon bsseq
13.2 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
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1.7k
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Post-Doc - Milan: miRNAs and non-coding RNAs identification from RNAseq data
Sequencing RNASeq miRNA Cancer Sequencing RNASeq miRNA Cancer
13.2 years ago mattia pelizzola ▴ 200
0
votes
1
reply
1.2k
views
DiffBind error loading dba.count
Cancer CMA DiffBind Cancer CMA DiffBind
updated 13.2 years ago by ▴ 70 • written 13.2 years ago by ▴ 350
0
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3
replies
2.6k
views
problems reading fcs files / flowcore / read.fcs (David Corne)
Cancer flowCore Cancer flowCore
updated 13.2 years ago by ▴ 10 • written 13.3 years ago by ▴ 240
0
votes
1
reply
1.5k
views
Warnings with running easyRNASeq with easyRNASeq tutorial
RNASeq Annotation GUI Cancer BSgenome BSgenome easyRNASeq RNASeq Annotation GUI Cancer
updated 13.2 years ago by ★ 1.2k • written 13.2 years ago by ★ 2.0k
0
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2
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1.5k
views
problems reading fcs files / flowcore / read.fcs (David Corne)
Cancer flowCore Cancer flowCore
13.3 years ago • updated 13.2 years ago Jiang, Mike ★ 1.3k
0
votes
6
replies
2.5k
views
Biostring: print sequence alignment to file
Alignment Cancer Biostrings Alignment Cancer Biostrings
updated 13.2 years ago by ▴ 100 • written 13.2 years ago by 16k
0
votes
1
reply
1.3k
views
Bug in GenomicRanges precede/follow
Cancer Cancer
updated 13.2 years ago by ★ 6.8k • written 13.2 years ago by ▴ 40
0
votes
3
replies
2.1k
views
GO enrichment significance
GO Clustering Cancer Lung GO Clustering Cancer Lung
13.3 years ago • updated 13.2 years ago Grimes Mark ▴ 40
0
votes
0
replies
693
views
Bioc 2012 Schedule
Cancer Cancer
13.3 years ago Martin Morgan 25k
0
votes
0
replies
952
views
Problem with R453Plus1 Toolbox and files from a Roche GS Junior
Cancer Cancer
13.3 years ago Olivia Jardin-Mathé ▴ 10
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votes
5
replies
1.4k
views
GappedAlignmentPairs requests
Alignment Cancer GenomicRanges Alignment Cancer GenomicRanges
updated 13.3 years ago by ★ 11k • written 13.3 years ago by 16k
0
votes
1
reply
886
views
Very Different group sizes in DE of two conditions
miRNA Cancer edgeR DESeq miRNA Cancer edgeR DESeq
updated 13.3 years ago by 53k • written 13.3 years ago by ★ 13k
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2
replies
1.5k
views
overview function of made4
Cancer Prostate Cancer Prostate
updated 13.3 years ago by 25k • written 13.3 years ago by ▴ 60
0
votes
1
reply
1.4k
views
Error message running through CQN Vignette
Cancer cqn Cancer cqn
updated 13.3 years ago by ★ 6.5k • written 13.3 years ago by ★ 2.0k
0
votes
1
reply
1.6k
views
AnnotationDbi: NewSchema vignette error
BiocViews miRNA Annotation Cancer Organism biocViews AnnotationDbi BiocViews BiocViews
updated 13.3 years ago by ★ 7.2k • written 13.3 years ago by ▴ 910
0
votes
2
replies
1.3k
views
Cleaning up after getSeq(BSgenome, GRanges)
Cancer Cancer
updated 13.3 years ago by 16k • written 13.3 years ago by ★ 13k
0
votes
4
replies
1.9k
views
A question with DEXSeq package: inconsistency between normalized counts vs. fitted expression, fitted splicing or fold changes
Cancer DEXSeq Cancer DEXSeq
updated 13.3 years ago by ★ 1.9k • written 13.3 years ago by ▴ 40
0
votes
1
reply
1.0k
views
Biostring: print sequence alignment to file
Sequencing Alignment Cancer Biostrings Sequencing Alignment Cancer Biostrings
updated 13.3 years ago by 16k • written 13.3 years ago by ▴ 100
0
votes
4
replies
1.1k
views
BSgenome packages for new UCSC rn5 and galGal4 assemblies
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
updated 13.3 years ago by ★ 6.5k • written 13.3 years ago by 16k
0
votes
0
replies
1.4k
views
flowCore 1.22.0 broken for some FCS files
Cancer safe flowCore Cancer safe flowCore
13.3 years ago Josef Spidlen ▴ 140
0
votes
1
reply
1.3k
views
How many tests do you need to moderate the t-statistic in Limma
Cancer Cancer
updated 13.3 years ago by ▴ 130 • written 13.3 years ago by ★ 2.0k
0
votes
3
replies
1.4k
views
processed gene expression datasets
Cancer Cancer
13.3 years ago Alyaa Mahmoud ▴ 440
0
votes
0
replies
1.8k
views
[JOB] NGS and computational genomics postdoc positions
Cancer Cancer
13.3 years ago mattia pelizzola ▴ 200
0
votes
3
replies
2.6k
views
batch effects 450K
Clustering Cancer Breast minfi sva Clustering Cancer Breast minfi sva
updated 13.4 years ago by ▴ 110 • written 13.4 years ago by ★ 13k
0
votes
7
replies
2.0k
views
Amplicon and exon level read counts and GC content
Coverage Cancer Coverage Cancer
updated 13.4 years ago by 25k • written 13.4 years ago by ▴ 440
1,555 results • Page 8 of 32
Recent ...
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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