Showing : Cancer • reset
1
vote
0
replies
2.1k
views
pileup coverage from BAM file
Coverage Cancer IRanges GenomicRanges Coverage Cancer IRanges GenomicRanges
12.6 years ago Martin Morgan 25k
0
votes
0
replies
2.0k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.6 years ago Ed Schwalbe ▴ 20
0
votes
0
replies
1.0k
views
question about how to get ranges in Biostrings
Cancer IRanges Gviz Cancer IRanges Gviz
12.6 years ago Hervé Pagès 16k
0
votes
0
replies
1.2k
views
Biostrings
GO Cancer Biostrings cycle GO Cancer Biostrings cycle
12.6 years ago Hervé Pagès 16k
0
votes
1
reply
2.5k
views
Bioconductor Digest, Vol 120, Issue 12
Microarray qPCR Coverage Annotation Pathways Visualization Cancer Breast Organism affy
12.6 years ago Matthew Thornton ▴ 380
0
votes
3
replies
1.5k
views
speed of runmed on SimpleRleList
Coverage Cancer Coverage Cancer
updated 12.6 years ago by 16k • written 12.7 years ago by ▴ 740
0
votes
0
replies
968
views
New course material: Intermediate R / Bioc for High-Throughput Sequence Analysis
Annotation Visualization Cancer Annotation Visualization Cancer
12.6 years ago Martin Morgan 25k
0
votes
0
replies
975
views
Extract Exon Features from GenomicFeatures Leads to Inconsistent Pairing of Gene and Exon IDs
Cancer GenomicFeatures Cancer GenomicFeatures
12.6 years ago Hervé Pagès 16k
0
votes
0
replies
1.9k
views
Job openings at Barts Cancer Institute, QMUL: Postdoctoral Research assistant and Bioinformatician
Sequencing Cancer Breast Sequencing Cancer Breast
12.6 years ago Claude Chelala ▴ 40
0
votes
0
replies
1.7k
views
[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.6 years ago stefano iacus ▴ 430
0
votes
1
reply
3.7k
views
a diffBind problem
Cancer edgeR DiffBind Cancer edgeR DiffBind
12.7 years ago Rory Stark ★ 5.2k
0
votes
13
replies
2.9k
views
statistical test for time course data
Cancer limma edgeR Cancer limma edgeR
updated 12.7 years ago by 53k • written 12.7 years ago by ▴ 260
0
votes
2
replies
1.5k
views
LogFC query in Limma
Pathways Cancer probe limma convert Pathways Cancer probe limma convert
updated 12.7 years ago by 53k • written 12.7 years ago by ▴ 130
0
votes
0
replies
757
views
Course reminder: Intermediate R / Bioc for Sequence Analysis
Cancer Cancer
12.7 years ago Martin Morgan 25k
0
votes
1
reply
819
views
Best Package To Normalize Microarray Data with Few Samples
Microarray Cancer Microarray Cancer
updated 12.7 years ago by ★ 4.2k • written 12.7 years ago by ▴ 230
0
votes
2
replies
1.8k
views
[devteam-bioc] Can you give me a sample to calculate the Read Depth with Rsamtools?
Coverage Cancer Rsamtools Coverage Cancer Rsamtools
updated 12.7 years ago by ▴ 10 • written 12.7 years ago by 25k
0
votes
6
replies
3.5k
views
about ComBat plot for non parametric
Microarray Cancer Microarray Cancer
updated 12.7 years ago by ▴ 30 • written 12.7 years ago by ▴ 870
0
votes
0
replies
1.0k
views
Error - BSgenomeForge function
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
12.7 years ago Hervé Pagès 16k
0
votes
4
replies
879
views
Limma and XML
Cancer Cancer
updated 12.7 years ago by 53k • written 12.8 years ago by ▴ 20
0
votes
0
replies
1.2k
views
Course: Intermediate R / Bioconductor for High-Throughput Sequence Analysis, 14-15 Feb, Seattle
Cancer Cancer
12.8 years ago Martin Morgan 25k
0
votes
0
replies
1.0k
views
Error installing iFlow (Jaques Fattaccioli)
Cancer iFlow BiocInstaller Cancer iFlow BiocInstaller
12.8 years ago Finak, Greg ▴ 40
0
votes
1
reply
1.3k
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer affylmGUI Cancer affylmGUI
updated 12.8 years ago by ▴ 450 • written 12.8 years ago by ★ 2.0k
0
votes
0
replies
782
views
Bos taurus genome
Cancer BSgenome BSgenome Cancer BSgenome BSgenome
12.8 years ago Hervé Pagès 16k
0
votes
0
replies
638
views
reducing hits from countGenomicOverlaps()
Cancer Cancer
12.8 years ago Michael Lawrence ★ 11k
0
votes
0
replies
922
views
Computer for the analysis of high-throughput genomic data
Sequencing Microarray GO Network Cancer Sequencing Microarray GO Network Cancer
12.8 years ago Steve Lianoglou ★ 13k
0
votes
28
replies
3.8k
views
countMatches() (was: table for GenomicRanges)
Cancer IRanges Cancer IRanges
updated 12.8 years ago by ★ 11k • written 12.8 years ago by 16k
0
votes
2
replies
1.6k
views
normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 12.8 years ago by ▴ 20 • written 12.8 years ago by 25k
0
votes
0
replies
1.9k
views
Error message with transcriptCounts(easyRNASeq) performed with gtf file generated with cuffmerge
RNASeq Annotation Normalization Cancer Organism BSgenome BSgenome easyRNASeq RNASeq
12.8 years ago Richard Friedman ★ 2.0k
0
votes
3
replies
2.4k
views
Error: package/namespace load failed for ‘affycoretools
GO GUI Cancer GO GUI Cancer
updated 12.8 years ago by ★ 13k • written 12.8 years ago by ★ 2.0k
0
votes
0
replies
1.6k
views
Why does a call to "unique" removes a DNAStringSet names?
Cancer Cancer
12.8 years ago Hervé Pagès 16k
0
votes
1
reply
1.2k
views
edgeR 3.0.6: Possible (small) bug in glmLRT when passing contrasts?
Cancer edgeR Cancer edgeR
updated 12.8 years ago by 53k • written 12.8 years ago by ▴ 30
0
votes
0
replies
1.3k
views
Job postings - computational biologists in translational science
Sequencing Cancer Sequencing Cancer
12.8 years ago Crispin Miller ★ 1.1k
0
votes
4
replies
1.3k
views
question about TranscriptDb
Cancer Cancer
updated 12.8 years ago by ★ 7.2k • written 12.8 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Fwd: all human gene coordinates
Cancer Cancer
updated 12.8 years ago by ▴ 440 • written 12.9 years ago by ★ 13k
0
votes
1
reply
1.3k
views
filter low expression tags
Cancer Cancer
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 40
0
votes
7
replies
2.9k
views
Getting counts for previously undetected transcripts and genes with easyRNASeq: comparison to Cufflinks
RNASeq Annotation Cancer edgeR cqn easyRNASeq RNASeq Annotation Cancer edgeR cqn
updated 12.9 years ago by ★ 1.2k • written 12.9 years ago by ★ 2.0k
0
votes
8
replies
2.5k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 12.9 years ago by ★ 11k • written 12.9 years ago by 16k
0
votes
0
replies
1.0k
views
readAligned with bowtie2 input
Alignment Cancer ShortRead Alignment Cancer ShortRead
12.9 years ago Martin Morgan 25k
0
votes
0
replies
1.5k
views
Error: cannot allocate vector of size 618.0 Mb
Annotation Cancer cdf Annotation Cancer cdf
12.9 years ago Henrik Bengtsson ★ 2.4k
0
votes
5
replies
1.9k
views
EBcoexpress error - initializeHP() error
Microarray Cancer EBcoexpress Microarray Cancer EBcoexpress
updated 12.9 years ago by ★ 8.2k • written 12.9 years ago by ★ 13k
0
votes
4
replies
1.9k
views
AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 12.9 years ago by ▴ 120 • written 12.9 years ago by ★ 13k
0
votes
2
replies
1.5k
views
error message with easyRNASeq use case
RNASeq Cancer Organism easyRNASeq RNASeq Cancer Organism easyRNASeq
updated 12.9 years ago by 68k • written 12.9 years ago by ★ 2.0k
0
votes
3
replies
3.4k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 12.9 years ago by 21k • written 12.9 years ago by ▴ 300
0
votes
3
replies
1.9k
views
limma design (paired and factorial?)
Cancer Prostate limma Cancer Prostate limma
updated 12.9 years ago by 53k • written 12.9 years ago by ▴ 30
0
votes
2
replies
865
views
limma: instances of highly variable paired ratios, but very small p-values
Cancer limma Cancer limma
updated 12.9 years ago by ▴ 20 • written 12.9 years ago by 53k
0
votes
6
replies
2.3k
views
Bioc packages not working with R2.15.2?
Cancer oligo Cancer oligo
updated 12.9 years ago by ★ 4.3k • written 12.9 years ago by ▴ 170
0
votes
0
replies
561
views
limma: instances of highly variable paired ratios, but very small p-values
Cancer limma Cancer limma
12.9 years ago Ryan Basom ▴ 20
0
votes
3
replies
2.3k
views
Error: 'devel' version requires a more recent R
GUI Cancer easyRNASeq GUI Cancer easyRNASeq
updated 12.9 years ago by 21k • written 12.9 years ago by ★ 2.0k
0
votes
0
replies
1.8k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
12.9 years ago McGee, Monnie ▴ 300
0
votes
0
replies
1.3k
views
Bioinformatics job posting
Sequencing Cancer Sequencing Cancer
12.9 years ago Yinyin Yuan ▴ 10
1,555 results • Page 7 of 32
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
Awards • All
Popular Question to Michael Love 43k
Popular Question to Peter • 0
Popular Question to Travis • 0
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Locations • All
United States, 24 minutes ago
United States, 33 minutes ago
Poland, 59 minutes ago
The city by the bay, 1 hour ago
Pittsburgh, United States, 1 hour ago
Traffic: 562 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6