Bioconductor Coldata

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744

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DESeq2 design coldata

updated 8 months ago by swbarnes2 ★ 1.4k • written 8 months ago by arfranco ▴ 130

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848

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ColData pheatmap DESeq2

written 18 months ago by dania.khalid • 0

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1.5k

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SingleCellExperiment colData rename

updated 22 months ago by Basti ▴ 780 • written 22 months ago by achoppe ▴ 10

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739

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BiSeq Coldata

4.6 years ago akhaira • 0

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1.8k

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deseq2 levels factor colData

updated 5.8 years ago by Michael Love 43k • written 5.8 years ago by ariel ▴ 20

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46k

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deseq2 coldata

updated 6.1 years ago by swbarnes2 ★ 1.4k • written 6.1 years ago by mjrarcher ▴ 10

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3.6k

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variantannotation coldata

updated 6.3 years ago by Valerie Obenchain ★ 6.8k • written 6.3 years ago by lvclark ▴ 10

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4.2k

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deseq2 coldata NA

updated 4 months ago by Michael Love 43k • written 6.4 years ago by t.kuilman ▴ 170

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1.7k

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multiassayexperiment colData

updated 7.1 years ago by Levi Waldron ★ 1.1k • written 7.1 years ago by Lluís Revilla Sancho ▴ 760

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Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0

`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …

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scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

How do I fix an odd voom plot in a combined dataset?

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