Bioconductor Coldata

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1.2k

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DESeq2 design coldata

updated 19 months ago by swbarnes2 ★ 1.4k • written 19 months ago by arfranco ▴ 130

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1.3k

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ColData pheatmap DESeq2

written 2.4 years ago by dania.khalid • 0

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2.1k

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SingleCellExperiment colData rename

updated 2.8 years ago by Basti ▴ 780 • written 2.8 years ago by achoppe ▴ 10

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937

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BiSeq Coldata

5.5 years ago akhaira • 0

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2.3k

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deseq2 levels factor colData

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by ariel ▴ 20

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50k

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deseq2 coldata

updated 7.0 years ago by swbarnes2 ★ 1.4k • written 7.1 years ago by mjrarcher ▴ 10

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4.3k

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variantannotation coldata

updated 7.2 years ago by Valerie Obenchain ★ 6.8k • written 7.2 years ago by lvclark ▴ 10

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4.9k

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deseq2 coldata NA

updated 15 months ago by Michael Love 43k • written 7.3 years ago by t.kuilman ▴ 170

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2.1k

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multiassayexperiment colData

updated 8.0 years ago by Levi Waldron ★ 1.1k • written 8.0 years ago by Lluís Revilla Sancho ▴ 760

9 results • Page 1 of 1

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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