Showing : Combat SVA • reset
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SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA combat sva leek
updated 2.9 years ago by • 0 • written 7.0 years ago by ▴ 10
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.7 years ago jmsendoya • 0
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Help with multiple batch effects
combat sva batch effect
5.9 years ago Fp • 0
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Number of SVA increased after ComBat
combat sva
6.1 years ago jonellevillar • 0
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Combat prior plots good enough?
combat combat sva
6.6 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
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removing batch effects using sva combat and linear regression
combat sva microarry Jeff leek
6.8 years ago DataFanatic ▴ 10
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SVA: Reference manual improvment
combat sva sva
7.0 years ago alice.anlind • 0
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What is the input for Combat in R?
combat sva input files
7.2 years ago arisarkar88 ▴ 40
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RPKM counts with SVA package & Combat with SVA?
batch effect combat sva sva
7.2 years ago Ahdee ▴ 50
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954
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Problem with Combat batch adjustment
combat sva
7.4 years ago vinnu260 ▴ 10
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is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva batch effect comba
updated 7.5 years ago by ▴ 110 • written 7.5 years ago by ▴ 10
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is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 7.5 years ago by ▴ 50 • written 7.5 years ago by ▴ 10
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SVA) Error while using 'sva' package - combat
combat sva
7.7 years ago kkwon • 0
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Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 7.7 years ago by ▴ 650 • written 7.7 years ago by ▴ 830
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Batch effect problem using SVA showing problems
SVA combat sva batch effect
updated 7.7 years ago by ▴ 650 • written 7.7 years ago by ▴ 10
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.8 years ago DSP • 0
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SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
8.0 years ago John Townsend ▴ 20
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SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 8.0 years ago by ▴ 850 • written 8.0 years ago by ▴ 20
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2.5k
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cross platform normalization in R
R Combat SVA
updated 8.3 years ago by ★ 13k • written 8.3 years ago by • 0
19 results • Page 1 of 1
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Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons by Michael Love 41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
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Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
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