Bioconductor DESEQ2

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deseq2

updated 5 days ago by Sey R. • 0 • written 4.6 years ago by hsbio ▴ 10

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DESeq2 contrasts

updated 6 days ago by ATpoint ★ 4.1k • written 7 days ago by bioinf ▴ 10

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158

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RNA-seq DESeq2

updated 23 hours ago by ATpoint ★ 4.1k • written 2 days ago by Reza • 0

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DESeq2 coefficient

10 weeks ago • updated 4 days ago JKim • 0

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DiffBind ChIPSeqData DESeq2

updated 5 days ago by Michael Love 41k • written 5 days ago by marcusn • 0

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DESeq2

updated 21 hours ago by Michael Love 41k • written 2 days ago by Zainab ▴ 10

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DESeq2

updated 3 days ago by Michael Love 41k • written 3 days ago by Espresso • 0

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130

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DESeq2

4 days ago • updated 3 days ago kcarey • 0

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120

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DESeq2 ImpulseDE2 timecour timecoursedata moanin

6 days ago • updated 3 days ago Aurora • 0

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197

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DESeq2 design coldata

updated 2 days ago by swbarnes2 ★ 1.3k • written 3 days ago by arfranco ▴ 130

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DESeq2

2 hours ago fduguchunhui • 0

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103

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DESeq2

updated 5 days ago by ATpoint ★ 4.1k • written 5 days ago by Dev • 0

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101

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DESeq2

updated 5 days ago by Michael Love 41k • written 6 days ago by Agung • 0

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135

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DESeq2

updated 4 days ago by ATpoint ★ 4.1k • written 4 days ago by angelathuynh5 • 0

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DESeq2

updated 4 days ago by Michael Love 41k • written 5 days ago by HAK • 0

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132

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DESeq2 StatisticalMethod Proteomics DifferentialExpression RNASeq

updated 3 days ago by ATpoint ★ 4.1k • written 4 days ago by james.zhang20 • 0

16 results • Page 1 of 1

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Answer: Method to find pathways different between 2 groups by Gordon Smyth 50k

> When I search camera limma on pubmed, I found 2 papers I am unclear what point you are trying to make. limma's camera method has been fo…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…

Comment: DNAString: Standard checksum function? by Henrik Bengtsson ★ 2.4k

For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…

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Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

package goseq seems to be not available on the latest version of R

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Scholar to ATpoint ★ 4.1k