Biostar DESeq2

Showing : DESeq2 • reset

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rlog DESeq2 VST

19 hours ago Bumble • 0

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phyloseq DESeq2

updated 1 day ago by Michael Love 35k • written 2 days ago by dschnitzler • 0

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108

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deseq2 apeglm DESeq2

4 days ago i.sudbery ▴ 20

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DESeq2 PCA

updated 4 days ago by swbarnes2 ▴ 970 • written 5 days ago by Jonas • 0

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116

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DESeq2

5 days ago Sam • 0

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rlog DESeq2 vst outliers

5 days ago Bex • 0

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152

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MRN RNASeq Normalization DESeq2

updated 5 days ago by Michael Love 35k • written 7 days ago by Serge • 0

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104

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DESeq2 DEXseq

updated 5 days ago by Michael Love 35k • written 7 days ago by k.vitting.seerup ▴ 100

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132

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DESeq2

6 days ago • updated 5 days ago walter.eckalbar • 0

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140

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RNASeq vst R rlog DESeq2

updated 5 days ago by Michael Love 35k • written 9 days ago by celiburgos • 0

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155

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Ashr LFCShrinkage IHW DESeq2

29 days ago • updated 6 days ago Bex • 0

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171

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DESeq2

5 weeks ago • updated 1 day ago Andrey • 0

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424

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deseq2 noiseq lowcounts rnaseq

updated 8 hours ago by bioinformatic_trainee • 0 • written 16 months ago by andreia • 0

13 results • Page 1 of 1

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Answer: Change the interval of bed file by James W. MacDonald 58k

How about ``` > library(GenomicRanges) ## reproducibility > set.seed(0xabeef) ## fake GRranges with scores > gr <- GRanges(rep("chr…

Comment: Uniform window size for different genes by James W. MacDonald 58k

OK, maybe I don't understand at all. From your original post I thought you wanted a single representative 'gene' rather than all the transc…

Comment: Uniform window size for different genes by rbenel ▴ 20

I tried some workaround, displaying the same gene on both tracks and playing with the `heights` but I still can't get the gene model to be …

Comment: Limma prametrization by Giovanni • 0

Thank you!

Answer: Gviz DataTrack data transformation on the fly by Robert Ivanek ▴ 710

Hi Robert, There was before only implementation of `mean` in aggregation for `window=-1`. This is now fixed in release (1.38.2) and dev…

Votes

A: How to get all possible comparisons in DiffBind

Answer: Limma prametrization

Comment: Limma prametrization

A: Use of pseudoalignment estimated counts as input to edgeR and Limma-Voom

Answer: Unable to GetGRangesFromEnsDb

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Prophet to nabiyogesh • 0