Bioinformatics Answers

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DESeq2 R

6 hours ago • updated 3 hours ago Gimena • 0

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DESeq2 plotCounts

8 hours ago elizabethe819 • 0

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DESeq2

1 day ago melissa.mageroy • 0

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dese DESeq2

updated 5 hours ago by ATpoint ▴ 590 • written 1 day ago by abhisekdey061 • 0

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DEGseq DESeq2 Designformula

updated 2 days ago by swbarnes2 ▴ 710 • written 3 days ago by Nicolò • 0

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DESeq2

updated 2 days ago by ATpoint ▴ 590 • written 2 days ago by deseq2man • 0

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DESeq2

updated 13 hours ago by Michael Love 32k • written 2 days ago by Tash. • 0

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plotPCA DESeq2 RUVSeq removebatcheffect()

2 days ago elizabethe819 • 0

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DESeq2 TimeCourse

3 days ago serpalma.v ▴ 60

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DESeq2

updated 2 days ago by ATpoint ▴ 590 • written 3 days ago by GlycineMax • 0

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DESeq2

4 days ago Yosapol • 0

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120

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TxDb.Mmusculus.UCSC.mm10.ensGene DESeq2 tximport

7 days ago • updated 4 days ago zli1 • 0

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181

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GeneExpressionWorkflow DESeq2 GeneExpression

8 days ago • updated 6 days ago Yosapol • 0

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1.3k

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NanoString Differential Expressed Genes Analysis DESeq2

updated 1 day ago by Michael Love 32k • written 21 months ago by lim6432 ▴ 30

14 results • Page 1 of 1

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Comment: Limma paired analysis design question by jefflincoln4 • 0

Thank you Gordon. One more thing, why use the log of blood iron concentration?

Answer: Limma paired analysis design question by Gordon Smyth 42k

Just put (log) blood iron concentration and `pair` in the design matrix. limma will work with differences automatically -- there's no need…

Comment: Extracting the findPalindrome() results by Hervé Pagès 14k

Also, you have a point: the output of `Biostrings::findPalindromes()` is an XStringViews object and `as.data.frame()` does a poor job on th…

Comment: Compute fgsea with my own database with R version 4.0.2 by assaron ▴ 190

I'm not sure what would be the best course of action in your case, if there is one at all, but I'd suggest to keep the ranking on the gene-…

Comment: Error installing Deseq2 by ATpoint ▴ 590

Go through the error logs and find the first error, this is where you have to start debugging, this here is just the consequences of the in…