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DMRcate
•
reset
0
votes
0
replies
85
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
27 days ago
Macsue
• 0
0
votes
2
replies
507
views
EPIC array hg38 annotation?
minfi
DMRcate
11 weeks ago
mycetes
• 0
0
votes
0
replies
130
views
What is the significance of DMR in DMRcate
DMRcate
12 weeks ago
chuanjiao6
• 0
3
votes
2
replies
270
views
Question about DMRcate
DMRcate
dmrcate
3 months ago
chuanjiao6
• 0
8
votes
7
replies
1.1k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 5 months ago by
Daniel E. Weeks
▴ 30
2
votes
6
replies
1.4k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 28 days ago by
Tim Peters
▴ 170 • written 5 months ago by
rae.alshammari
▴ 10
0
votes
5
replies
601
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Jitendra
▴ 10
0
votes
1
reply
741
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate
DMR.plot
updated 6 months ago by
shepherl
3.8k • written 6 months ago by
Chiara
• 0
3
votes
4
replies
857
views
DMRcate design
Epigenetics
EpigeneticsWorkflow
DMRcate
7 months ago
Jitendra
▴ 10
0
votes
1
reply
477
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 8 months ago by
Tim Peters
▴ 170 • written 8 months ago by
b.curran
• 0
1
vote
2
replies
972
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 8 days ago by
Tim Peters
▴ 170 • written 14 months ago by
jose.ramirez1
▴ 10
0
votes
11
replies
3.7k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate
minfi
updated 3 months ago by
Tim Peters
▴ 170 • written 7.1 years ago by
Jenny Drnevich
★ 2.0k
12 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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Rory Stark
★ 5.2k
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tangming2005
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Ian D.
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junhui.li11
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James W. MacDonald
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