Bioconductor DMRcate

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3.7k

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DMRcate minfi

updated 12 weeks ago by Tim Peters ▴ 170 • written 7.1 years ago by Jenny Drnevich ★ 2.0k

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1.3k

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ChAMP DMRcate minfi

updated 23 days ago by Tim Peters ▴ 170 • written 5 months ago by rae.alshammari ▴ 10

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1.1k

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DMRcate

written 4 months ago by Daniel E. Weeks ▴ 30

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931

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DMRcate Gviz

updated 3 days ago by Tim Peters ▴ 170 • written 14 months ago by jose.ramirez1 ▴ 10

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831

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Epigenetics EpigeneticsWorkflow DMRcate

7 months ago Jitendra ▴ 10

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729

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DMRcate DMR.plot

updated 6 months ago by shepherl 3.8k • written 6 months ago by Chiara • 0

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593

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stattistics epicarray Epigenetics DMRcate

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by Jitendra ▴ 10

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468

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miss DMRcate missMethyl

updated 8 months ago by Tim Peters ▴ 170 • written 8 months ago by b.curran • 0

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466

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minfi DMRcate

11 weeks ago • updated 10 weeks ago mycetes • 0

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261

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DMRcate dmrcate

12 weeks ago chuanjiao6 • 0

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126

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DMRcate

11 weeks ago chuanjiao6 • 0

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DNAMethylation DMRcate

22 days ago Macsue • 0

12 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0