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DNAStringSet
•
reset
3
votes
8
replies
1.7k
views
problem with @ranges@start in DNAStringSet
vcf
testthat
dnastringset
8.5 years ago
TimothéeFlutre
▴ 80
6
votes
6
replies
5.2k
views
how to extract part of the DNA sequences from a DNAstringset
DNAstringset
updated 7.2 years ago by
Hervé Pagès
16k • written 7.2 years ago by
XIA.PAN
▴ 20
1
vote
5
replies
4.3k
views
Converting a DNAStringSetList to characters quickly
readVcf
DNAStringSet
DNAStringSetList
variantannotation
readvcf
9.1 years ago
dan.gatti
• 0
2
votes
5
replies
4.4k
views
How to use subSeq with DNAStringSet and information of GroupedIRanges?
subseq
Xvector
dnastringset
updated 7.0 years ago by
Hervé Pagès
16k • written 7.0 years ago by
Sophie
• 0
3
votes
4
replies
3.7k
views
How to convert a DnaStringSet object to list of seq?
dnastringset
list
stringset
updated 6.9 years ago by
Martin Morgan
25k • written 6.9 years ago by
vinod.acear
▴ 50
0
votes
4
replies
1.4k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
8.4 years ago
ben.ward
▴ 30
2
votes
3
replies
1.7k
views
visualing pwm motif on a DNAstring
pwmenrich
dnastringset
updated 8.1 years ago by
Robert Stojnic
▴ 50 • written 8.1 years ago by
sekawaiwai2006
▴ 20
0
votes
3
replies
1.1k
views
I want to sample (random ) nucleic acids at middle 20 positions of DNAstring set
DNAStringSet
sample
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
vinod.acear
▴ 50
0
votes
2
replies
837
views
how to deal with multiple barcodes/index in the analysis
dnastringset
aastringset
7.2 years ago
XIA.PAN
▴ 20
15
votes
2
replies
18k
views
Extract sequence from DNAStringSet object
dnastringset
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
komal.rathi
▴ 120
2
votes
1
reply
799
views
DNAStringSet to DNAStringSetList according to pattern in sequence names
dnastringset
dnastringsetlist
seqnames
5.5 years ago
s.ghignone
▴ 10
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
TimothéeFlutre
▴ 80
12 results • Page
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Comment: deseq2 results
by
swbarnes2
★ 1.3k
Cross-posted https://www.biostars.org/p/9594331/#9594458
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Mike Smith
★ 6.5k
The other answers here are all good and demonstrate the issue with floating point comparisons nicely. I'd like to add that your particular…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Votes
A: Volcanoplot with limma - RAW P-values or Adj.P-Values
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
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Robert Castelo
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50k
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