Showing : DiFFBind • reset
1
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6.9k
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DiffBind - question on the use of filtered or unfiltered input data
DiffBind
written 2.6 years ago by ▴ 10
0
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0
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238
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DiffBind plot.profile error
BiocParallel DiffBind
5 months ago this_is_me_trying • 0
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0
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1.0k
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Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq profileplyr DiffBind
6 months ago Muhammad • 0
0
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0
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342
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I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap mergingpeaks ChIPseq DiffBind
7 months ago atlanta • 0
0
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4
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2.3k
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DiffBind can't find a DAR
dar ATACSeq DiffBind
7 months ago • updated 6 months ago Mengjun • 0
0
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0
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235
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DiffBind multi-tissue comparison
DiffBind
7 months ago lryrainche • 0
1
vote
8
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2.7k
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[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw ChIPseq DESeq2 DiffBind
8 months ago • updated 7 months ago Luca • 0
0
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0
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355
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DiffBind recommendation on using IgG bams
peakcalling DiffBind
8 months ago Harish • 0
0
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4
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1.4k
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DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR DiffBind
updated 8 months ago by • 0 • written 8 months ago by • 0
0
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1
reply
407
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building samplesheet and plot profile
DiffBind
9 months ago yf • 0
0
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5
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808
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Diffbind interpretation of data - fold change
DiffBind
10 months ago Vera • 0
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0
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573
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Diffbind: Cut&Run: E-coli spike-in
Normalization DiffBind
12 months ago kim • 0
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0
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372
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diffbind covariates
DiffBind ATACSeq
updated 12 months ago by 43k • written 12 months ago by ▴ 220
0
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2
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959
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DiffBind dba.report discrepancy
DiffBind
12 months ago aelbassiouny • 0
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0
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339
views
DiffBind subset replicates
DiffBind
13 months ago Haiping • 0
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0
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590
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Background normalization of Diffbind dba.normalize
Normalization DiffBind
13 months ago Young Boqin • 0
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0
replies
497
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Trying to understand basic DiffBind usage
ChIPSeq DiffBind
14 months ago Alejandro • 0
0
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2
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622
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DiffBind for MBD-seq
MBD-seq DiffBind
14 months ago Marianna ▴ 20
0
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1
reply
705
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DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
14 months ago • updated 9 months ago Ian D. ▴ 70
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1
reply
611
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
15 months ago mdidish ▴ 10
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0
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512
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DiffBind dba.plotprofile y-axis range
DiffBind
15 months ago Tara • 0
0
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8
replies
1.3k
views
DiffBind full library size not reliable
DiffBind Reads MACS2 FullLibSize
updated 15 months ago by ★ 5.2k • written 15 months ago by ▴ 20
1
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3
replies
902
views
Create merged ChIP heatmap across conditions
DiffBind profileplyr
updated 15 months ago by ★ 5.2k • written 16 months ago by • 0
0
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0
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764
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Blacklist regions on DBA object (diffbind)
DiffBind chipseq
16 months ago gamma.jian ▴ 10
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2
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947
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind DifferentialPeakCalling
17 months ago Mallory • 0
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0
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502
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Difference in Contrast in DiffBind
DiffBind
18 months ago user_bioinfo • 0
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0
replies
509
views
need help with Diffbind multiple groups
DiffBind ChIPSeqData
18 months ago Dinesh • 0
0
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1
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1.0k
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 12 months ago by • 0 • written 18 months ago by ▴ 10
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0
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790
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
18 months ago yvonneh • 0
0
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0
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461
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
18 months ago Ian D. ▴ 70
0
votes
9
replies
1.9k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
18 months ago • updated 12 months ago Ian D. ▴ 70
3
votes
1
reply
874
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 18 months ago by 43k • written 18 months ago by ▴ 10
0
votes
1
reply
1.3k
views
ATACseq merge peaks
DiffBind
updated 18 months ago by ★ 5.0k • written 18 months ago by • 0
0
votes
4
replies
940
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
19 months ago lonn • 0
0
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0
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522
views
Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
19 months ago Virangika • 0
2
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2
replies
1.0k
views
[DiffBind] Obtaining normalization factors
DiffBind
19 months ago Henry ▴ 10
2
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2
replies
1.7k
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
19 months ago Henry ▴ 10
0
votes
0
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632
views
How to extract the coordinate of dba.plotPCA?
DiffBind PCA
19 months ago feather-W • 0
0
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0
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628
views
PCA plot for normalized counts using Diffbind
DiffBind PCAplot
19 months ago Ankit ▴ 20
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0
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595
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
19 months ago Pierre Lindenbaum ▴ 10
0
votes
0
replies
569
views
Multifactor analysis in DiffBind
DiffBind multifactoranalysis
20 months ago erbrocato • 0
0
votes
2
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908
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
20 months ago Sam ▴ 10
0
votes
1
reply
759
views
Exact same results in Diffbind with different normalization methods
DiffBind
20 months ago red_bricks ▴ 60
0
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1
reply
1.0k
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
21 months ago isaromero8888 • 0
0
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0
replies
926
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
21 months ago Jawahar • 0
0
votes
0
replies
586
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl ChIPSeq DiffBind
22 months ago frueher • 0
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0
replies
540
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
22 months ago Aswathy • 0
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votes
0
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783
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind CUT&Tag
22 months ago Hai • 0
0
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0
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664
views
ATACseq- Counts around TSS plot
DiffBind ATACSeq
22 months ago inna.gur • 0
2
votes
2
replies
2.0k
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 6 months ago by • 0 • written 2.2 years ago by ▴ 10
678 results • Page 1 of 14
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Comment: Research and Service Group Leader positions in AI in Biology at EMBL by eja.gssssswssswwse.r.m • 0
For mobile gamers seeking innovative experiences, free download ck999 game brings engaging gameplay right to your device. Whether exploring…
Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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