Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DiFFBind
•
reset
1
vote
11
replies
7.4k
views
DiffBind - question on the use of filtered or unfiltered input data
DiffBind
written 2.7 years ago by
Oscar
▴ 10
0
votes
0
replies
269
views
DiffBind plot.profile error
BiocParallel
DiffBind
6 months ago
this_is_me_trying
• 0
0
votes
0
replies
1.1k
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq
profileplyr
DiffBind
7 months ago
Muhammad
• 0
0
votes
0
replies
376
views
I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap
mergingpeaks
ChIPseq
DiffBind
8 months ago
atlanta
• 0
0
votes
4
replies
2.4k
views
DiffBind can't find a DAR
dar
ATACSeq
DiffBind
8 months ago
Mengjun
• 0
0
votes
0
replies
266
views
DiffBind multi-tissue comparison
DiffBind
9 months ago
lryrainche
• 0
1
vote
8
replies
2.8k
views
[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw
ChIPseq
DESeq2
DiffBind
9 months ago • updated 8 months ago
Luca
• 0
0
votes
0
replies
382
views
DiffBind recommendation on using IgG bams
peakcalling
DiffBind
9 months ago
Harish
• 0
0
votes
4
replies
1.4k
views
DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR
DiffBind
updated 9 months ago by
Harry
• 0 • written 9 months ago by
tifaGis
• 0
0
votes
1
reply
468
views
building samplesheet and plot profile
DiffBind
10 months ago
yf
• 0
0
votes
5
replies
880
views
Diffbind interpretation of data - fold change
DiffBind
11 months ago
Vera
• 0
0
votes
0
replies
644
views
Diffbind: Cut&Run: E-coli spike-in
Normalization
DiffBind
13 months ago
kim
• 0
0
votes
0
replies
418
views
diffbind covariates
DiffBind
ATACSeq
updated 14 months ago by
Michael Love
43k • written 14 months ago by
Alpesh Querer
▴ 220
0
votes
2
replies
997
views
DiffBind dba.report discrepancy
DiffBind
14 months ago
aelbassiouny
• 0
0
votes
0
replies
365
views
DiffBind subset replicates
DiffBind
14 months ago
Haiping
• 0
0
votes
0
replies
654
views
Background normalization of Diffbind dba.normalize
Normalization
DiffBind
14 months ago
Young Boqin
• 0
0
votes
0
replies
524
views
Trying to understand basic DiffBind usage
ChIPSeq
DiffBind
15 months ago
Alejandro
• 0
0
votes
2
replies
654
views
DiffBind for MBD-seq
MBD-seq
DiffBind
16 months ago
Marianna
▴ 20
0
votes
1
reply
746
views
DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
16 months ago • updated 10 months ago
Ian D.
▴ 70
0
votes
1
reply
640
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
16 months ago
mdidish
▴ 10
0
votes
0
replies
542
views
DiffBind dba.plotprofile y-axis range
DiffBind
16 months ago
Tara
• 0
0
votes
8
replies
1.4k
views
DiffBind full library size not reliable
DiffBind
Reads
MACS2
FullLibSize
updated 16 months ago by
Rory Stark
★ 5.2k • written 16 months ago by
Marianna
▴ 20
1
vote
3
replies
946
views
Create merged ChIP heatmap across conditions
DiffBind
profileplyr
updated 17 months ago by
Rory Stark
★ 5.2k • written 17 months ago by
jesswhitts
• 0
0
votes
0
replies
830
views
Blacklist regions on DBA object (diffbind)
DiffBind
chipseq
18 months ago
gamma.jian
▴ 10
0
votes
2
replies
1.0k
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind
DifferentialPeakCalling
18 months ago
Mallory
• 0
0
votes
0
replies
536
views
Difference in Contrast in DiffBind
DiffBind
19 months ago
user_bioinfo
• 0
0
votes
0
replies
534
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
19 months ago
Dinesh
• 0
0
votes
1
reply
1.1k
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 13 months ago by
B.N
• 0 • written 20 months ago by
Henry
▴ 10
0
votes
0
replies
840
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
20 months ago
yvonneh
• 0
0
votes
0
replies
480
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
20 months ago
Ian D.
▴ 70
0
votes
9
replies
2.0k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
20 months ago • updated 14 months ago
Ian D.
▴ 70
3
votes
1
reply
911
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind
ChIPSeqData
DESeq2
updated 20 months ago by
Michael Love
43k • written 20 months ago by
marcusn
▴ 10
0
votes
1
reply
1.4k
views
ATACseq merge peaks
DiffBind
updated 20 months ago by
ATpoint
★ 5.0k • written 20 months ago by
Shloka
• 0
0
votes
4
replies
978
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
20 months ago
lonn
• 0
0
votes
0
replies
550
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
20 months ago
Virangika
• 0
2
votes
2
replies
1.1k
views
[DiffBind] Obtaining normalization factors
DiffBind
20 months ago
Henry
▴ 10
2
votes
2
replies
1.8k
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind
Normalization
20 months ago
Henry
▴ 10
0
votes
0
replies
660
views
How to extract the coordinate of dba.plotPCA?
DiffBind
PCA
21 months ago
feather-W
• 0
0
votes
0
replies
649
views
PCA plot for normalized counts using Diffbind
DiffBind
PCAplot
21 months ago
Ankit
▴ 20
0
votes
0
replies
637
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind
ATACSeq
21 months ago
Pierre Lindenbaum
▴ 10
0
votes
0
replies
596
views
Multifactor analysis in DiffBind
DiffBind
multifactoranalysis
21 months ago
erbrocato
• 0
0
votes
2
replies
947
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
21 months ago
Sam
▴ 10
0
votes
1
reply
801
views
Exact same results in Diffbind with different normalization methods
DiffBind
21 months ago
red_bricks
▴ 60
0
votes
1
reply
1.1k
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind
ATACSeq
23 months ago
isaromero8888
• 0
0
votes
0
replies
957
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind
edgeR
ATACSeq
DESeq2
23 months ago
Jawahar
• 0
0
votes
0
replies
618
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl
ChIPSeq
DiffBind
23 months ago
frueher
• 0
0
votes
0
replies
566
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
23 months ago
Aswathy
• 0
0
votes
0
replies
813
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind
CUT&Tag
24 months ago
Hai
• 0
0
votes
0
replies
689
views
ATACseq- Counts around TSS plot
DiffBind
ATACSeq
24 months ago
inna.gur
• 0
2
votes
2
replies
2.0k
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 8 months ago by
etiennedanis
• 0 • written 2.3 years ago by
Mark
▴ 10
678 results • Page
1 of 14
Recent ...
Replies
Comment: nice 3D displays for PCA analysis
by
adam80haynes
• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
by
TikTsokaasocissalpc
• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Awards
• All
Popular Question
to
Gordon Smyth
53k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Istvan Albert
▴ 50
Popular Question
to
Dario Strbenac
★ 1.6k
Scholar
to
Nikos Ignatiadis
▴ 180
Locations
• All
United States,
10 minutes ago
United States,
47 minutes ago
France,
2 hours ago
Finland,
3 hours ago
The city by the bay,
3 hours ago
Traffic: 922 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6