Showing : Diffbind • reset
1
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10
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6.1k
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DiffBind - question on the use of filtered or unfiltered input data
DiffBind
updated 22 days ago by • 0 • written 2.3 years ago by ▴ 10
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0
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148
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DiffBind plot.profile error
BiocParallel DiffBind
11 weeks ago this_is_me_trying • 0
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0
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881
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Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq profileplyr DiffBind
3 months ago Muhammad • 0
0
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0
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283
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I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap mergingpeaks ChIPseq DiffBind
4 months ago atlanta • 0
0
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4
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2.2k
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DiffBind can't find a DAR
dar ATACSeq DiffBind
4 months ago Mengjun • 0
0
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0
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169
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DiffBind multi-tissue comparison
DiffBind
5 months ago lryrainche • 0
1
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8
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2.5k
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[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw ChIPseq DESeq2 DiffBind
5 months ago • updated 4 months ago Luca • 0
0
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0
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274
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DiffBind recommendation on using IgG bams
peakcalling DiffBind
5 months ago Harish • 0
0
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4
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1.3k
views
DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR DiffBind
updated 5 months ago by • 0 • written 5 months ago by • 0
0
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1
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263
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building samplesheet and plot profile
DiffBind
6 months ago yf • 0
0
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5
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654
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Diffbind interpretation of data - fold change
DiffBind
7 months ago Vera • 0
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0
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498
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Diffbind: Cut&Run: E-coli spike-in
Normalization DiffBind
9 months ago kim • 0
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0
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326
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diffbind covariates
DiffBind ATACSeq
updated 9 months ago by 43k • written 10 months ago by ▴ 220
0
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2
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863
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DiffBind dba.report discrepancy
DiffBind
10 months ago aelbassiouny • 0
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0
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266
views
DiffBind subset replicates
DiffBind
10 months ago Haiping • 0
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0
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495
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Background normalization of Diffbind dba.normalize
Normalization DiffBind
10 months ago Young Boqin • 0
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0
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426
views
Trying to understand basic DiffBind usage
ChIPSeq DiffBind
11 months ago Alejandro • 0
0
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2
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557
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DiffBind for MBD-seq
MBD-seq DiffBind
11 months ago Marianna ▴ 20
0
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1
reply
652
views
DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
12 months ago • updated 6 months ago Ian D. ▴ 70
0
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1
reply
506
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
12 months ago mdidish ▴ 10
0
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0
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429
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DiffBind dba.plotprofile y-axis range
DiffBind
12 months ago Tara • 0
0
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8
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1.2k
views
DiffBind full library size not reliable
DiffBind Reads MACS2 FullLibSize
updated 12 months ago by ★ 5.2k • written 12 months ago by ▴ 20
1
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3
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828
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Create merged ChIP heatmap across conditions
DiffBind profileplyr
updated 13 months ago by ★ 5.2k • written 13 months ago by • 0
0
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0
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632
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Blacklist regions on DBA object (diffbind)
DiffBind chipseq
14 months ago gamma.jian ▴ 10
0
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2
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848
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind DifferentialPeakCalling
14 months ago Mallory • 0
0
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0
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453
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Difference in Contrast in DiffBind
DiffBind
15 months ago user_bioinfo • 0
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0
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458
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need help with Diffbind multiple groups
DiffBind ChIPSeqData
15 months ago Dinesh • 0
0
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1
reply
915
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 9 months ago by • 0 • written 15 months ago by ▴ 10
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0
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647
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DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
15 months ago yvonneh • 0
0
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0
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426
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
15 months ago Ian D. ▴ 70
0
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9
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1.7k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
15 months ago • updated 10 months ago Ian D. ▴ 70
3
votes
1
reply
810
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 15 months ago by 43k • written 15 months ago by ▴ 10
0
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1
reply
1.2k
views
ATACseq merge peaks
DiffBind
updated 16 months ago by ★ 4.9k • written 16 months ago by • 0
0
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4
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854
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
16 months ago lonn • 0
0
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0
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470
views
Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
16 months ago Virangika • 0
2
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2
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958
views
[DiffBind] Obtaining normalization factors
DiffBind
16 months ago Henry ▴ 10
2
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2
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1.6k
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
16 months ago Henry ▴ 10
0
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0
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544
views
How to extract the coordinate of dba.plotPCA?
DiffBind PCA
17 months ago feather-W • 0
0
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0
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585
views
PCA plot for normalized counts using Diffbind
DiffBind PCAplot
17 months ago Ankit ▴ 20
0
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0
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548
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
17 months ago Pierre Lindenbaum ▴ 10
0
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0
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536
views
Multifactor analysis in DiffBind
DiffBind multifactoranalysis
17 months ago erbrocato • 0
0
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2
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833
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
17 months ago Sam ▴ 10
0
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1
reply
667
views
Exact same results in Diffbind with different normalization methods
DiffBind
17 months ago red_bricks ▴ 60
0
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1
reply
899
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
19 months ago isaromero8888 • 0
0
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0
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888
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
19 months ago Jawahar • 0
0
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0
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531
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl ChIPSeq DiffBind
19 months ago frueher • 0
0
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0
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502
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
19 months ago Aswathy • 0
0
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0
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726
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Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind CUT&Tag
19 months ago Hai • 0
0
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0
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618
views
ATACseq- Counts around TSS plot
DiffBind ATACSeq
20 months ago inna.gur • 0
2
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2
replies
1.9k
views
DiffBind; Error: No sites have activity greater than filter value
DiffBind
updated 3 months ago by • 0 • written 24 months ago by ▴ 10
678 results • Page 1 of 14
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