Showing : Diffbind • reset
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2
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ATACseq rudimentary questions
ATACSeq DiffBind
14 days ago • updated 8 days ago 4747 • 0
1
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11
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7.5k
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DiffBind - question on the use of filtered or unfiltered input data
DiffBind
written 2.7 years ago by ▴ 10
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0
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280
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DiffBind plot.profile error
BiocParallel DiffBind
7 months ago this_is_me_trying • 0
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0
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1.1k
views
Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
chipseq profileplyr DiffBind
8 months ago Muhammad • 0
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0
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388
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I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap mergingpeaks ChIPseq DiffBind
9 months ago atlanta • 0
0
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4
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2.4k
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DiffBind can't find a DAR
dar ATACSeq DiffBind
9 months ago • updated 8 months ago Mengjun • 0
0
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0
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271
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DiffBind multi-tissue comparison
DiffBind
9 months ago lryrainche • 0
1
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8
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2.8k
views
[ChIP-seq] DESeq2 on counts matrix from union set of called peaks
csaw ChIPseq DESeq2 DiffBind
10 months ago • updated 9 months ago Luca • 0
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0
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394
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DiffBind recommendation on using IgG bams
peakcalling DiffBind
10 months ago Harish • 0
0
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4
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1.5k
views
DiffBind edgeR normalization --- why are the normalization factors all equal to 1?
edgeR DiffBind
updated 10 months ago by • 0 • written 10 months ago by • 0
0
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1
reply
483
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building samplesheet and plot profile
DiffBind
11 months ago yf • 0
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5
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925
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Diffbind interpretation of data - fold change
DiffBind
12 months ago Vera • 0
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0
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679
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Diffbind: Cut&Run: E-coli spike-in
Normalization DiffBind
14 months ago kim • 0
0
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0
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434
views
diffbind covariates
DiffBind ATACSeq
updated 14 months ago by 43k • written 14 months ago by ▴ 220
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2
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1.0k
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DiffBind dba.report discrepancy
DiffBind
14 months ago aelbassiouny • 0
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0
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367
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DiffBind subset replicates
DiffBind
15 months ago Haiping • 0
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0
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670
views
Background normalization of Diffbind dba.normalize
Normalization DiffBind
15 months ago Young Boqin • 0
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0
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531
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Trying to understand basic DiffBind usage
ChIPSeq DiffBind
16 months ago Alejandro • 0
0
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2
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665
views
DiffBind for MBD-seq
MBD-seq DiffBind
16 months ago Marianna ▴ 20
0
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1
reply
756
views
DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
17 months ago • updated 11 months ago Ian D. ▴ 70
0
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1
reply
650
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
17 months ago mdidish ▴ 10
0
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0
replies
552
views
DiffBind dba.plotprofile y-axis range
DiffBind
17 months ago Tara • 0
0
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8
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1.5k
views
DiffBind full library size not reliable
DiffBind Reads MACS2 FullLibSize
updated 17 months ago by ★ 5.2k • written 17 months ago by ▴ 20
1
vote
3
replies
977
views
Create merged ChIP heatmap across conditions
DiffBind profileplyr
updated 17 months ago by ★ 5.2k • written 18 months ago by • 0
0
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0
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847
views
Blacklist regions on DBA object (diffbind)
DiffBind chipseq
18 months ago gamma.jian ▴ 10
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2
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1.0k
views
Trouble reading samplesheet in with diffbind to create dba
DiffBind DifferentialPeakCalling
19 months ago Mallory • 0
0
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0
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550
views
Difference in Contrast in DiffBind
DiffBind
20 months ago user_bioinfo • 0
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0
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547
views
need help with Diffbind multiple groups
DiffBind ChIPSeqData
20 months ago Dinesh • 0
0
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1
reply
1.1k
views
dba.plotProfile() plotting and interpretation
DiffBind
updated 14 months ago by • 0 • written 20 months ago by ▴ 10
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0
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857
views
DiffBind: no peaks in DBA object
DiffBind macs2 chipseq
20 months ago yvonneh • 0
0
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0
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492
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
20 months ago Ian D. ▴ 70
0
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9
replies
2.0k
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
20 months ago • updated 15 months ago Ian D. ▴ 70
3
votes
1
reply
930
views
Fold change calculation in Diffbind vs. DESEQ2?
DiffBind ChIPSeqData DESeq2
updated 20 months ago by 43k • written 20 months ago by ▴ 10
0
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1
reply
1.4k
views
ATACseq merge peaks
DiffBind
updated 20 months ago by ★ 5.0k • written 20 months ago by • 0
0
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4
replies
995
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind DESeq2 ATACSeq
21 months ago lonn • 0
0
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0
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562
views
Diffbind Error in socketConnection
DiffBind Errorinsocketconnection SpikeIn
21 months ago Virangika • 0
2
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2
replies
1.1k
views
[DiffBind] Obtaining normalization factors
DiffBind
21 months ago Henry ▴ 10
2
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2
replies
1.9k
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind Normalization
21 months ago Henry ▴ 10
0
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0
replies
670
views
How to extract the coordinate of dba.plotPCA?
DiffBind PCA
21 months ago feather-W • 0
0
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0
replies
671
views
PCA plot for normalized counts using Diffbind
DiffBind PCAplot
21 months ago Ankit ▴ 20
0
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0
replies
659
views
DIFFBIND : beginner questions, sex, multiple phenotypes, etc...
DiffBind ATACSeq
21 months ago Pierre Lindenbaum ▴ 10
0
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0
replies
606
views
Multifactor analysis in DiffBind
DiffBind multifactoranalysis
22 months ago erbrocato • 0
0
votes
2
replies
968
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
22 months ago Sam ▴ 10
0
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1
reply
813
views
Exact same results in Diffbind with different normalization methods
DiffBind
22 months ago red_bricks ▴ 60
0
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1
reply
1.1k
views
Extracting binding matrix with raw counts from DiffBind in ATAC-seq data not working
DiffBind ATACSeq
23 months ago isaromero8888 • 0
0
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0
replies
990
views
Which normalization should I do use for ATAC Seq using DiffBind
DiffBind edgeR ATACSeq DESeq2
24 months ago Jawahar • 0
0
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0
replies
631
views
Parameter bSubControl with no effect in DiffBind dba.count?
bSubControl ChIPSeq DiffBind
24 months ago frueher • 0
0
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0
replies
576
views
Errror in running EdgeR based differential analysis in diffbind
DiffBind
2.0 years ago Aswathy • 0
0
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0
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835
views
Differential Binding of CUT&Tag peaks with normalization using scaling factor
DiffBind CUT&Tag
2.0 years ago Hai • 0
0
votes
0
replies
711
views
ATACseq- Counts around TSS plot
DiffBind ATACSeq
2.0 years ago inna.gur • 0
679 results • Page 1 of 14
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Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
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