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ENTREZID
•
reset
0
votes
13
replies
7.5k
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KEGG enrichment in R and gene IDs
KEGG
enrichKEGG
R
entrezid
20 months ago
Laia
▴ 10
2
votes
5
replies
4.2k
views
UniprotKB AC/ID to Entrez ID Conversion
ID
Uniprot
EntrezID
2.5 years ago
tom.kloter
• 0
5
votes
7
replies
3.1k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID
SYMBOL
AnnotationDbi
org.Hs.eg.db
updated 3.8 years ago by
Gordon Smyth
51k • written 3.9 years ago by
bastien_chassagnol
• 0
1
vote
4
replies
3.1k
views
DESeq2 swap ensembl gene id rownames with gene symbol column
deseq2
dataframe
ensembl gene id
gene symbol
entrezid
4.9 years ago
jason.williams
▴ 10
4 results • Page
1 of 1
Recent ...
Replies
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
Michael Love
42k
That is the rows that did converge.
Answer: Is my time course analysis with DESeq2 valid?
by
Michael Love
42k
For choosing the correct statistical design, I recommend working with a local statistician or someone familiar with linear models in R. I h…
Answer: WGCNA coupled with differential expression analysis: question about baseline mod
by
kaidaneil52
• 0
Using WGCNA (Weighted Gene Co-expression Network Analysis) alongside differential expression analysis can enhance insights into gene regula…
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
by
Mike Smith
★ 6.6k
Unfortunately I received this update from the Ensembl Helpdesk on 2024-11-14: > Unfortunately, the fix is taking longer than expected and …
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
by
daniela.gutierrezandrade
• 0
Hello, I am running into a similar issue. After setting the design, at the beginning of the analysis I filter rows with low counts. d…
Votes
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
biomaRt rnorvegicus_gene_ensembl not available anymore
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