Showing : ENmix • reset
0
votes
5
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758
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preprocessENmix colnames Error
ENmix Preprocessing
4 months ago Eve • 0
1
vote
2
replies
380
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How to get the DMR?
ENmix
5 months ago Alex • 0
0
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6
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1.0k
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Running ENmix with mouse methylation manifest: readidat error - Error in readmanifest(manifestfile) : length(control.line) == 1 && is.integer(cont…
ENmix Bioconductor
updated 6 months ago by • 0 • written 7 months ago by ▴ 10
0
votes
18
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3.1k
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problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.8 years ago by • 0
0
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2
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1.1k
views
Help with ENmix readidat
ENmix IlluminaHumanMethylationEPICmanifest
updated 7 months ago by 67k • written 2.6 years ago by • 0
0
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0
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873
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can ENmix::oxBS.MLE be run on comBat-adjusted data?
ENmix comBat
3.7 years ago joannew • 0
0
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0
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711
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ENmix: how to combine oxBS.MLE with RCP?
ENmix
3.8 years ago joannew • 0
0
votes
1
reply
1.1k
views
could not find function "ComBat.mc"
ENmix
updated 4.1 years ago by 4.1k • written 4.1 years ago by ▴ 10
1
vote
0
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732
views
Error in peak calling with Combp
ENmix
4.1 years ago mwjnorris ▴ 10
0
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0
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795
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Error for ENmix::bmiq.mc() on one sample
ENmix
5.8 years ago moldach ▴ 20
0
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0
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1.3k
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Error in ENmix::bmiq.mc(): BMIQ estimates encountered error, try to run it again
methylation ENmix BMIQ wateRmelon
5.9 years ago • updated 5.8 years ago moldach ▴ 20
1
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2
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1.2k
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how to install ENmix github master branch on Ubuntu machine?
ENmix
written 8.3 years ago by ▴ 10
0
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4
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2.2k
views
ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
8.5 years ago DSP • 0
13 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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