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EPICarray
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Struggle with the replicates of epic array data
limma
epicarray
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
written 10 months ago by
Melisa Tecik
• 0
0
votes
5
replies
1.2k
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 23 months ago by
James W. MacDonald
68k • written 23 months ago by
Jitendra
▴ 10
5
votes
5
replies
1.5k
views
limma output for epic array methylation data
linearregression
epicarray
MethylationArray
limma
2.1 years ago
Jitendra
▴ 10
0
votes
3
replies
1.7k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 2.3 years ago by
Basti
▴ 780 • written 2.3 years ago by
Jitendra
▴ 10
0
votes
2
replies
1.7k
views
Error in loading file using champ.load() from ChAMP package
champ.load
epicarray
ChAMP
methylationArrayAnalysis
2.4 years ago
arisarkar88
▴ 40
0
votes
2
replies
1.8k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis
EPICarray
ChAMP
Champ.SVD
4.5 years ago • updated 4.4 years ago
arisarkar88
▴ 40
3
votes
4
replies
3.9k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 8.0 years ago by
rcavalca
▴ 140 • written 8.0 years ago by
karthikrpad
▴ 10
7 results • Page
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Comment: Visualization of Functional Enrichment Result with enrichplot: How to control la
by
zhaoqiansun0592
• 0
Wow, this is super helpful! I always struggle with label sizes in enrichplot. Glad to see a solution using gginnards([Pasjans][1]) and ggre…
Comment: Could we detect difference at pathway level but not significant different at gen
by
zhaoqiansun0592
• 0
Interesting question! It's cool that ChatGPT4 gave such a helpful answer. I've also been wondering if pathways([space waves][1]) can show d…
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
by
zhaoqiansun0592
• 0
Good to know there are workarounds for these tricky [doodle baseball][1]! Thanks for sharing the tips! [1]: https://doodle-baseball.cc/
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
James W. MacDonald
68k
Yes. Your packages have odd Y version numbers (where the version is X.Y.Z). That means they are devel packages (release versions have even …
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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