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EPICarray
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Struggle with the replicates of epic array data
limma
epicarray
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
written 10 weeks ago by
Melisa Tecik
• 0
0
votes
5
replies
973
views
error while running DMRcate
stattistics
epicarray
Epigenetics
DMRcate
updated 15 months ago by
James W. MacDonald
67k • written 15 months ago by
Jitendra
▴ 10
5
votes
5
replies
1.2k
views
limma output for epic array methylation data
linearregression
epicarray
MethylationArray
limma
17 months ago
Jitendra
▴ 10
0
votes
3
replies
1.4k
views
Batch correction using control probes in EPIC array data
RnBeads
minfiData
minfi
EPICarray
updated 21 months ago by
Basti
▴ 780 • written 21 months ago by
Jitendra
▴ 10
0
votes
2
replies
1.5k
views
Error in loading file using champ.load() from ChAMP package
champ.load
epicarray
ChAMP
methylationArrayAnalysis
21 months ago
arisarkar88
▴ 40
0
votes
2
replies
1.6k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis
EPICarray
ChAMP
Champ.SVD
3.8 years ago
arisarkar88
▴ 40
3
votes
4
replies
3.5k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 7.4 years ago by
rcavalca
▴ 140 • written 7.4 years ago by
karthikrpad
▴ 10
7 results • Page
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Answer: Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes
by
James W. MacDonald
67k
This support site is meant to provide support for Bioconductor packages, but `Meffil` is not part of Bioconductor. You could presumably con…
Comment: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
> It looks like the ssgseaParam function might not be passing the > correct parameters to GSVA::gsva() Apparently because of the extra com…
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
by
franknappi14
• 0
I tried it and it's working properly.
Answer: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
ATpoint
★ 4.6k
The vignette covers batch effects as per the authors best practice, please read it and consider following it.
Comment: DESeq2 analysis with transcript counts
by
kahunroleh
• 0
Thanks for sharing the solution. I also face this problem. [nulls][1] [1]: https://nulls-brawl-apk.fr/
Votes
Answer: Reducing and aggregating GRanges with gaps using plyranges
Answer: Find exact GRanges match keeping metadata columns
Answer: Find exact GRanges match keeping metadata columns
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
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