Bioconductor EPICarray

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limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19

written 9 months ago by Melisa Tecik • 0

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stattistics epicarray Epigenetics DMRcate

updated 22 months ago by James W. MacDonald 68k • written 22 months ago by Jitendra ▴ 10

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1.5k

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linearregression epicarray MethylationArray limma

2.0 years ago Jitendra ▴ 10

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1.7k

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RnBeads minfiData minfi EPICarray

updated 2.3 years ago by Basti ▴ 780 • written 2.3 years ago by Jitendra ▴ 10

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1.7k

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champ.load epicarray ChAMP methylationArrayAnalysis

2.4 years ago • updated 2.3 years ago arisarkar88 ▴ 40

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1.8k

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methylationArrayAnalysis EPICarray ChAMP Champ.SVD

4.4 years ago arisarkar88 ▴ 40

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ChAMP methylationepic epicarray epigenomics

updated 7.9 years ago by rcavalca ▴ 140 • written 7.9 years ago by karthikrpad ▴ 10

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Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I would like to clarify whether the command `res <- results(dds, name = "phaseLP.conditionTreated")` is the correct approach to generate …

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Not sure I understand. You ask how to do something and then show how one would do so.

Comment: DiffBind getting Fold values of near 0 by littlefishes20 ▴ 10

Same issues. All peaks return to a fold near 0, although they are significant when visualizing in IGV. Please find the MAplot and volcanoPl…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by snijesh ▴ 200

I have checked DEGs between Solvent Control (SC) of FP and LP and there are noticebale differences in terms of DEGs. ``` # Checking SC in …

Answer: A0A287BB68 not recognized as UNPROT key in org.Ss.eg.db using AnnotationDbi::sel by James W. MacDonald 68k

Apparently it's been over-ridden by a different UniProtKB ID ``` > select(org.Ss.eg.db, "MYH11", "UNIPROT", "SYMBOL") 'select()' retu…

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How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

Can NanoString data be analyzed using DESeq2?

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