Showing : EPICarray • reset
1
vote
3
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787
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Struggle with the replicates of epic array data
limma epicarray IlluminaHumanMethylationEPICanno.ilm10b2.hg19
written 11 months ago by • 0
0
votes
5
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1.3k
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 2.0 years ago by 68k • written 2.0 years ago by ▴ 10
5
votes
5
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1.5k
views
limma output for epic array methylation data
linearregression epicarray MethylationArray limma
2.2 years ago Jitendra ▴ 10
0
votes
3
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1.8k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by ▴ 10
0
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2
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1.8k
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Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
2.5 years ago arisarkar88 ▴ 40
0
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2
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1.9k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
4.6 years ago arisarkar88 ▴ 40
3
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4
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4.0k
views
Error while using champ.svd() function in subset of data
ChAMP methylationepic epicarray epigenomics
updated 8.1 years ago by ▴ 140 • written 8.1 years ago by ▴ 10
7 results • Page 1 of 1
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Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Answer: Streamlining the computing time for MiloDE p-value correction in large dataset? by Kevin Blighe ★ 4.0k
Hi Joseph, I agree with ATpoint's suggestion that pseudobulk aggregation (e.g., via aggregateData in scran or similar) would likely be far…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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