Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
EdgeR
•
reset
9
votes
12
replies
7.9k
views
Multi factor design edgeR/Deseq2
deseq2
edgeR
rna-seq
updated 27 days ago by
Elizabeth
• 0 • written 8.9 years ago by
gthm
▴ 30
6
votes
10
replies
1.7k
views
Which input file is used for DGEList in EgdeR?
salmon
edgeR
tximport
nf-core
gene_counts
updated 26 days ago by
i.atanasoai
• 0 • written 15 months ago by
mohammedtoufiq91
▴ 10
4
votes
6
replies
457
views
FilterByExpr low counts with small sample size
edgeR
28 days ago • updated 23 days ago
Jonathan
▴ 10
1
vote
3
replies
203
views
How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
DifferentialExpression
TimeCourse
timeOmics
edgeR
RNAseq
updated 20 hours ago by
Gordon Smyth
50k • written 1 day ago by
Ashley
• 0
5
votes
3
replies
298
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 5 days ago by
Gordon Smyth
50k • written 27 days ago by
Shaimaa Gamal
• 0
0
votes
3
replies
207
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 26 days ago by
Gordon Smyth
50k • written 27 days ago by
prity6459
• 0
3
votes
3
replies
362
views
permutation test in edgeR
rna-seq
edgeR
updated 24 days ago by
Gordon Smyth
50k • written 5 weeks ago by
Netanel
• 0
2
votes
3
replies
66
views
How to correctly adjust for gender in edgeR
design
glm
edgeR
updated 5 hours ago by
ATpoint
★ 4.1k • written 7 hours ago by
Guillermo
• 0
4
votes
2
replies
613
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
13 days ago • updated 9 days ago
gene_bioconductor
▴ 10
0
votes
2
replies
144
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
26 days ago
prity6459
• 0
1
vote
2
replies
200
views
Citation for edgeR user guide
edgeR
written 22 days ago by
k___
▴ 30
0
votes
1
reply
169
views
NEED FOR NESSASORY HELP
RNASeqData
edgeR
updated 12 days ago by
Gordon Smyth
50k • written 13 days ago by
z_bahari
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: error running enricher from clusterprofiler
by
Yael
• 0
It worked!!! Thanks alot, i think something in the gene_list wasnt right... Thanks agian
Comment: Create protein sequences including variants from a VCF file
by
Yun
• 0
This cannot work for a SNV file, since `injectSNPs` need a `SNPlocs` object
Comment: Can log2cpm be used for proteomics data normalization?
by
Daniel
• 0
Thank you for the quick reply and I apologize for it being on the wrong thread but the "post tag" function wasn't working properly.
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
I have arranged the code again following the other post and also the script you suggested. Now, I managed to install `org.Vdahliae.eg.db`. …
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Thanks again Guido, I will try to run the script you have suggested and see if I can install the package. Yes, I have seen this message a…
Votes
Answer: Trim/Filter out-of-bounds GRanges
Comment: How to correctly adjust for gender in edgeR
Create protein sequences including variants from a VCF file
A: DEXSeq design formula
Answer: SGSeq: moving toward diffex from SGSeq analysis
Awards
• All
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
boczniak767
▴ 720
Popular Question
to
jmoon1194
• 0
Popular Question
to
mat.lesche
▴ 90
Popular Question
to
jordi.planells
• 0
Locations
• All
United States,
3 minutes ago
France,
10 minutes ago
United States,
13 minutes ago
United States,
40 minutes ago
Israel,
45 minutes ago
Traffic: 877 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6