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shepherl
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27 days ago • updated 26 days ago
Tim Barry
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5 months ago
yanling
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sandmann.t
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3.1 years ago
shepherl
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Comment: Limma without eBayes, is it indistunguishable from Ordinary Least Square?
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The formula given in the original question is correct and yours is not. Your formula isn't even constrained to be between 0 and 1. Here is …
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A little late to the party, but I found that using the equation you specified, the p-values are actually slightly off from base R's `t.test…
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I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
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If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…
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