Biostar Curatedmetagenomicdata

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curatedMetagenomicData TreeSummarizedExperiment

9 weeks ago Davide • 0

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curatedmetagenomicdata

updated 3.1 years ago by Levi Waldron 1.1k • written 3.1 years ago by grp2009 • 0

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software error curatedmetagenomicdata annotationhub experimenthub

updated 4.8 years ago by Levi Waldron 1.1k • written 4.8 years ago by morganx ▴ 10

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694

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biocparallel curatedmetagenomicdata parallel dplyr

updated 4.9 years ago by Martin Morgan 25k • written 4.9 years ago by Lucas Schiffer ▴ 220

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ExperimentHub curatedMetagenomicData

updated 4.9 years ago by Lucas Schiffer ▴ 220 • written 5.0 years ago by Wolfgang Huber 13k

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Comment: Getting Bioconductor genome wide annotation for Candida auris by Javan Okendo • 0

@James thanks for being patient with me. The `org.Cauris.eg.db` package I created is available here: `https://github.com/javanOkendo/Candid…

Comment: Getting Bioconductor genome wide annotation for Candida auris by James W. MacDonald 58k

Ah, I get it. No, the UniProt data aren't added to a package generated using `makeOrgPackageFromNCBI`. That would require an additional dow…

Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE by Hervé Pagès 15k

Finally: [https://bioconductor.org/checkResults/3.14/bioc-LATEST/GenomeInfoDb/](https://bioconductor.org/checkResults/3.14/bioc-LATEST/Geno…

Comment: RNA-seq with patient samples without replicates with multiple timepoints by kevin • 0

Hi Gordon, thank you very much for your reply. Here is the sample table: Patient Timepoint Dose Id Responder Rank Mutated Genes T…

Comment: Getting Bioconductor genome wide annotation for Candida auris by Javan Okendo • 0

@James I did create the `org.Cauris.eg.db` but the Uniprot key name is missing when I do `keytypes(org.Cauris.eg.db)` as below. Is there a …

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My "Ask a Question" post has been flagged as spam - it is not

Answer: Is it valid to do gene comparisons on VST or rlog transformed data?

Is it valid to do gene comparisons on VST or rlog transformed data?

A: topGO and font size in the graph plots

Answer: relationship between bioconda and bioconductor

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