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FoldChange
•
reset
5
votes
4
replies
1.4k
views
Foldchange values Limma
limma
RNAseq
foldchange
5.2 years ago
susana.amaral.teixeira
▴ 20
3
votes
5
replies
4.9k
views
How does edgeR calculate fold change?
DifferentialExpression
DEA
FC
FoldChange
edgeR
2.7 years ago
zhxiaokang
▴ 20
4
votes
5
replies
1.4k
views
All genes display positive fold change in topTable results after limma
limma
microarray
foldchange
DEG
GEO
updated 4.3 years ago by
Gordon Smyth
50k • written 4.3 years ago by
Pietro
▴ 40
0
votes
2
replies
1.2k
views
sigh of log2FC values in DESeq2
sign
FoldChange
DESeq2
reference
updated 2.4 years ago by
Michael Love
42k • written 2.4 years ago by
yampolsk
• 0
0
votes
2
replies
1.6k
views
DESeq2 Log2 fold change does not make sense given change in TPM
DESeq2
TPM
Foldchange
updated 2.1 years ago by
Michael Love
42k • written 2.1 years ago by
dadca596
• 0
1
vote
2
replies
499
views
How to perform longitudinal analysis using EdgeR
StatisticalMethod
FoldChange
edgeR
RNASeq
5 months ago
Sabiha
▴ 20
2
votes
9
replies
2.3k
views
extract fold change of a list of gene from EdgeR?
EdgeR
RNAseq
Foldchange
updated 2.9 years ago by
swbarnes2
★ 1.4k • written 2.9 years ago by
najib
• 0
4
votes
4
replies
853
views
DESeq2 lfcShrink function used in DiffBind package
FoldChange
DiffBind
lfcShrink
Cut&TagData
11 months ago • updated 10 months ago
bhandary.8590
▴ 20
1
vote
1
reply
1.4k
views
rnaseqDTU log2fold change DEXSeq
DEXSeq
DTU
salmon
rnaseqDTU
foldchange
updated 5.1 years ago by
Michael Love
42k • written 5.4 years ago by
fiona.dick91
▴ 60
1
vote
1
reply
2.4k
views
Question regarding lfcShrink types in DiffBind
FoldChange
DiffBind
lfcShrink
updated 9 months ago by
Rory Stark
★ 5.2k • written 10 months ago by
bhandary.8590
▴ 20
0
votes
7
replies
2.4k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange
topGO
DifferentialExpression
enrichment
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
lessismore
▴ 20
0
votes
1
reply
914
views
First time Statistical Analysis of RNA-seq
edgeR
RNA-Seq
log2
foldchange
q_value
updated 2.4 years ago by
Gordon Smyth
50k • written 2.4 years ago by
johndavidgriner74
• 0
12 results • Page
1 of 1
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Comment: BayesSpace parameters for DLPFC Visium data
by
Newt
• 0
Hola guys. I recently read a review of EssayTyper on [https://nocramming.com/essaytyper-review][1] and was impressed by its depth and objec…
Comment: Visium RNA
by
Newt
• 0
asdasdasda
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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