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353

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DESeq2 log2 normalized counts

updated 4 months ago by James W. MacDonald 63k • written 4 months ago by Laia ▴ 10

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718

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Log2 edgeR RNA limma Normalization

6 months ago Sara • 0

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1.3k

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log2 DESeq2

10 months ago User000 • 0

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513

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edgeR RNA-Seq log2 foldchange q_value

updated 17 months ago by Gordon Smyth 47k • written 17 months ago by johndavidgriner74 • 0

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1.2k

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log2 RMA Affymetrix affy Normalization

updated 2.3 years ago by Kevin Blighe 3.8k • written 2.3 years ago by Lara • 0

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1.1k

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normalized counts log2

4.7 years ago agdif ▴ 10

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592

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mfuzz fold change log2 STANDARDISATION

4.9 years ago prakashpandey1111 • 0

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574

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NMF log2 classification bioconductor

5.0 years ago Seymoo • 0

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4.7k

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limma pvalue log2fc log2

updated 6 months ago by James W. MacDonald 63k • written 7.2 years ago by serpalma.v ▴ 60

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2.7k

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limma export log2 data agilent

updated 8.7 years ago by James W. MacDonald 63k • written 8.7 years ago by Jahn Davik ▴ 110

10 results • Page 1 of 1

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

Votes

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

Awards • All

Scholar to Tiago C. Silva ▴ 270