Bioconductor Foldchange

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2.3k

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EdgeR RNAseq Foldchange

updated 2.8 years ago by swbarnes2 ★ 1.3k • written 2.8 years ago by najib • 0

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2.3k

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foldchange topGO DifferentialExpression enrichment

updated 3.5 years ago by Gordon Smyth 50k • written 3.5 years ago by lessismore ▴ 20

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4.8k

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DifferentialExpression DEA FC FoldChange edgeR

2.7 years ago zhxiaokang ▴ 20

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1.4k

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limma microarray foldchange DEG GEO

updated 4.2 years ago by Gordon Smyth 50k • written 4.2 years ago by Pietro ▴ 40

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1.4k

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limma RNAseq foldchange

5.2 years ago • updated 5.1 years ago susana.amaral.teixeira ▴ 20

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816

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FoldChange DiffBind lfcShrink Cut&TagData

10 months ago bhandary.8590 ▴ 20

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1.6k

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DESeq2 TPM Foldchange

updated 2.1 years ago by Michael Love 41k • written 2.1 years ago by dadca596 • 0

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461

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StatisticalMethod FoldChange edgeR RNASeq

4 months ago Sabiha ▴ 20

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1.1k

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sign FoldChange DESeq2 reference

updated 2.3 years ago by Michael Love 41k • written 2.4 years ago by yampolsk • 0

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2.2k

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FoldChange DiffBind lfcShrink

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by bhandary.8590 ▴ 20

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893

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edgeR RNA-Seq log2 foldchange q_value

updated 2.3 years ago by Gordon Smyth 50k • written 2.3 years ago by johndavidgriner74 • 0

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1.4k

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DEXSeq DTU salmon rnaseqDTU foldchange

updated 5.0 years ago by Michael Love 41k • written 5.3 years ago by fiona.dick91 ▴ 60

12 results • Page 1 of 1

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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