Bioconductor GDC

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3.1k

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gdc tcga wes gdc data

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by Biologist ▴ 110

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1.6k

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R gdc rna-seq dna methylation

updated 5.5 years ago by Sean Davis 21k • written 5.5 years ago by RichardJActon ▴ 50

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1.1k

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genomicdatacommons tcga gdc rest http

updated 5.3 years ago by Sean Davis 21k • written 5.3 years ago by mk ▴ 20

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2.1k

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GDC TCGA tcgabiolinks

updated 2.0 years ago by cute scientist • 0 • written 5.4 years ago by Antonio Ahn ▴ 10

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1.3k

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TCGA MAF GDC snp mutations

updated 5.0 years ago by Sean Davis 21k • written 5.0 years ago by mario.zanfardino ▴ 160

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974

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tcgabiolinks filtering gdc TCGABiolinks rnaseq

4.3 years ago jam526 • 0

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3.2k

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tcgabiolinks gdc

7.5 years ago • updated 7.4 years ago jshelton • 0

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498

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TCGA GenomicDataCommons GDC

written 10 months ago by António Miguel de Jesus Domingues ▴ 490

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3.7k

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 7.1 years ago by Tiago Chedraoui Silva ▴ 260 • written 7.2 years ago by enigmargs • 0

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3.0k

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tcgabiolinks tcga-brca gdc pam50 rna-seq

6.1 years ago pfrancislyon • 0

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1.2k

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TCGAbiolinks TCGA GDC

4.4 years ago modarzi ▴ 10

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710

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TCGAbiolinks GDC TCGA

4.4 years ago modarzi ▴ 10

12 results • Page 1 of 1

Recent ...

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…

Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0