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GDCPrepare
•
reset
0
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0
replies
720
views
Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
20 months ago
Manav
• 0
0
votes
0
replies
1.4k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
4.5 years ago
fawazfebin
▴ 60
4
votes
5
replies
2.5k
views
GDCprepare - error
TCGABiolinks
GDCprepare
4.8 years ago
vm
▴ 30
2
votes
2
replies
1.5k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 4.8 years ago by
Tiago C. Silva
▴ 270 • written 4.8 years ago by
Talip Zengin
▴ 10
1
vote
5
replies
1.6k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
5.2 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
1.8k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
ansari.sarabio
• 0
0
votes
0
replies
839
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
6.4 years ago
lisa8191
• 0
0
votes
1
reply
1.6k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 6.9 years ago by
Dario Strbenac
★ 1.5k • written 6.9 years ago by
newbie
• 0
0
votes
3
replies
1.4k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
7.0 years ago
ugandhar.ch1
• 0
0
votes
2
replies
3.7k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 7.1 years ago by
Tiago Chedraoui Silva
▴ 260 • written 7.2 years ago by
enigmargs
• 0
0
votes
8
replies
2.6k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
7.6 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
1.2k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 7.7 years ago by
Tiago C. Silva
▴ 270 • written 7.7 years ago by
Mariana Boroni
▴ 10
12 results • Page
1 of 1
Recent ...
Replies
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Comment: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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Rory Stark
★ 5.2k
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tangming2005
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Ian D.
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