Showing : GDCprepare • reset
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare GDCDownload
3.1 years ago Manav • 0
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2.0k
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GDCprepare error in TCGAbiolinks
tcgabiolinks gdcprepare differential expression
6.0 years ago fawazfebin ▴ 60
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3.4k
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GDCprepare - error
TCGABiolinks GDCprepare
6.2 years ago vm ▴ 30
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TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 6.2 years ago by ▴ 270 • written 6.2 years ago by ▴ 10
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Issue with TCGAbiolinks package.
TCGA GDCprepare
6.7 years ago salvocomplicazioni1 • 0
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GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
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Reasoning for illegal operation
tcgabiolinks illegaloperation gdcprepare
7.8 years ago lisa8191 • 0
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How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 8.3 years ago by ★ 1.6k • written 8.3 years ago by • 0
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TCGA controlled data
R tcgabiolinks gdcprepare
8.4 years ago ugandhar.ch1 • 0
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Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.5 years ago by ▴ 260 • written 8.7 years ago by • 0
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TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
9.0 years ago sabarinath.chandrasekharan ▴ 10
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1.5k
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Error during GDCprepare
tcgabiolinks gdcprepare
updated 9.1 years ago by ▴ 270 • written 9.1 years ago by ▴ 10
12 results • Page 1 of 1
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Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20 by eja.gaasa2e.r.m • 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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