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GDCprepare
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0
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1.2k
views
Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
2.5 years ago
Manav
• 0
0
votes
0
replies
1.8k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
5.4 years ago
fawazfebin
▴ 60
4
votes
5
replies
3.1k
views
GDCprepare - error
TCGABiolinks
GDCprepare
5.7 years ago
vm
▴ 30
2
votes
2
replies
1.9k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 5.7 years ago by
Tiago C. Silva
▴ 270 • written 5.7 years ago by
Talip
▴ 10
1
vote
5
replies
2.0k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
6.1 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
2.3k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 6.3 years ago by
James W. MacDonald
68k • written 6.3 years ago by
ansari.sarabio
• 0
0
votes
0
replies
1.1k
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
7.2 years ago
lisa8191
• 0
0
votes
1
reply
2.0k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 7.7 years ago by
Dario Strbenac
★ 1.6k • written 7.7 years ago by
newbie
• 0
0
votes
3
replies
1.6k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
7.8 years ago
ugandhar.ch1
• 0
0
votes
2
replies
4.2k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 8.0 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.1 years ago by
enigmargs
• 0
0
votes
8
replies
3.1k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
8.5 years ago • updated 8.4 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
1.4k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 8.5 years ago by
Tiago C. Silva
▴ 270 • written 8.5 years ago by
Mariana Boroni
▴ 10
12 results • Page
1 of 1
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Comment: sesameDataCache is not work properly on my system
by
Samreen
• 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data
by
James W. MacDonald
68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format
by
James W. MacDonald
68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages?
by
wilkinson
• 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification
by
ATpoint
★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
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Answer: Differential expression of proteins using somascan data
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Handle zero effective gene length when tximport RSEM results
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