Bioconductor GDCprepare

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GDCPrepare GDCDownload

3.0 years ago Manav • 0

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tcgabiolinks gdcprepare differential expression

5.9 years ago fawazfebin ▴ 60

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TCGABiolinks GDCprepare

6.2 years ago vm ▴ 30

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TCGAbiolinks GDCprepare error

updated 6.2 years ago by Tiago C. Silva ▴ 270 • written 6.2 years ago by Talip ▴ 10

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TCGA GDCprepare

6.6 years ago salvocomplicazioni1 • 0

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tcgabiolinks gdcprepare

updated 6.8 years ago by James W. MacDonald 68k • written 6.8 years ago by ansari.sarabio • 0

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tcgabiolinks illegaloperation gdcprepare

7.7 years ago lisa8191 • 0

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 8.2 years ago by Dario Strbenac ★ 1.6k • written 8.2 years ago by newbie • 0

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R tcgabiolinks gdcprepare

8.3 years ago ugandhar.ch1 • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.5 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.6 years ago by enigmargs • 0

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tcgabiolinks gdcprepare

9.0 years ago • updated 8.9 years ago sabarinath.chandrasekharan ▴ 10

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tcgabiolinks gdcprepare

updated 9.0 years ago by Tiago C. Silva ▴ 270 • written 9.0 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

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Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Comment: European Bioconductor Conference 2023 planning by magnificent.mollusk.nvtp • 0

I once co-organized a genomics meetup where logistics, speaker balance, and outreach felt like solving a live [connections game](https://co…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

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A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

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Popular Question to Assa Yeroslaviz ★ 1.5k