Bioconductor GDCprepare

Showing : GDCprepare • reset

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GDCPrepare GDCDownload

3.2 years ago Manav • 0

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tcgabiolinks gdcprepare differential expression

6.0 years ago fawazfebin ▴ 60

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TCGABiolinks GDCprepare

6.3 years ago vm ▴ 30

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TCGAbiolinks GDCprepare error

updated 6.3 years ago by Tiago C. Silva ▴ 270 • written 6.3 years ago by Talip ▴ 10

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TCGA GDCprepare

6.7 years ago salvocomplicazioni1 • 0

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tcgabiolinks gdcprepare

updated 6.9 years ago by James W. MacDonald 68k • written 6.9 years ago by ansari.sarabio • 0

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tcgabiolinks illegaloperation gdcprepare

7.9 years ago lisa8191 • 0

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gdcprepare tcgabiolinks treatment_type R data extraction

updated 8.4 years ago by Dario Strbenac ★ 1.6k • written 8.4 years ago by newbie • 0

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R tcgabiolinks gdcprepare

8.5 years ago ugandhar.ch1 • 0

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tcgabiolinks tcga tcgadownload gdcprepare gdc

updated 8.6 years ago by Tiago Chedraoui Silva ▴ 260 • written 8.7 years ago by enigmargs • 0

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tcgabiolinks gdcprepare

9.1 years ago sabarinath.chandrasekharan ▴ 10

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1.5k

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tcgabiolinks gdcprepare

updated 9.2 years ago by Tiago C. Silva ▴ 270 • written 9.2 years ago by Mariana Boroni ▴ 10

12 results • Page 1 of 1

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Comment: deseq2 filter the low counts by empty_mt • 0

Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…

Comment: DESeq2 interactions by Michael Love 43k

GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …

Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k

We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you

Comment: bake() and cool() resulting in an empty table by Francesc • 0

Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…

Votes

Answer: DESeq2 interactions

Answer: Important: Bioconductor Release 3.22 Delayed

A: Multi-level experiments in Limma

Answer: Should voomWithQualityWeights still be used when the sample-specific weights var

Answer: DESeq2 for candidate gene analysis

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