Showing : GDCprepare • reset
0
votes
0
replies
1.6k
views
Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare GDCDownload
3.4 years ago Manav • 0
0
votes
0
replies
2.1k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks gdcprepare differential expression
6.2 years ago fawazfebin ▴ 60
4
votes
5
replies
3.5k
views
GDCprepare - error
TCGABiolinks GDCprepare
6.5 years ago vm ▴ 30
2
votes
2
replies
2.1k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks GDCprepare error
updated 6.5 years ago by ▴ 270 • written 6.5 years ago by ▴ 10
1
vote
5
replies
2.5k
views
Issue with TCGAbiolinks package.
TCGA GDCprepare
6.9 years ago salvocomplicazioni1 • 0
0
votes
2
replies
2.9k
views
GDCprepare stop working for some unknown reason
tcgabiolinks gdcprepare
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
0
votes
0
replies
1.2k
views
Reasoning for illegal operation
tcgabiolinks illegaloperation gdcprepare
8.1 years ago lisa8191 • 0
0
votes
1
reply
2.4k
views
How to get treatment information with TCGAbiolinks?
gdcprepare tcgabiolinks treatment_type R data extraction
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by • 0
0
votes
3
replies
1.9k
views
TCGA controlled data
R tcgabiolinks gdcprepare
8.7 years ago ugandhar.ch1 • 0
0
votes
2
replies
4.7k
views
Extract gene expression values from GDCprepare object
tcgabiolinks tcga tcgadownload gdcprepare gdc
updated 8.8 years ago by ▴ 260 • written 9.0 years ago by • 0
0
votes
8
replies
3.5k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks gdcprepare
9.3 years ago sabarinath.chandrasekharan ▴ 10
0
votes
1
reply
1.6k
views
Error during GDCprepare
tcgabiolinks gdcprepare
updated 9.4 years ago by ▴ 270 • written 9.4 years ago by ▴ 10
12 results • Page 1 of 1
Recent ...
Replies
Answer: Incosistencies in buildSNNGraph() function by stephengriffin04 • 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2 by stephengriffin04 • 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Awards • All
Autobiographer to Frances Turner ▴ 20
Popular Question to maltethodberg ▴ 180
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Lluís Revilla Sancho ▴ 760
Commentator to James W. MacDonald 68k
Locations • All
Portugal, 3 minutes ago
South Korea, 32 minutes ago
United Kingdom, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
Japan, 1 hour ago
Traffic: 1261 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6