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GDCprepare
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1.5k
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Error in GDCDownload and GDCPrepare for TCGA-PAAD Dataset
GDCPrepare
GDCDownload
3.2 years ago
Manav
• 0
0
votes
0
replies
2.0k
views
GDCprepare error in TCGAbiolinks
tcgabiolinks
gdcprepare
differential expression
6.0 years ago
fawazfebin
▴ 60
4
votes
5
replies
3.4k
views
GDCprepare - error
TCGABiolinks
GDCprepare
6.3 years ago
vm
▴ 30
2
votes
2
replies
2.0k
views
TCGAbiolinks GDCprepare error
TCGAbiolinks
GDCprepare
error
updated 6.3 years ago by
Tiago C. Silva
▴ 270 • written 6.3 years ago by
Talip
▴ 10
1
vote
5
replies
2.3k
views
Issue with TCGAbiolinks package.
TCGA
GDCprepare
6.7 years ago
salvocomplicazioni1
• 0
0
votes
2
replies
2.7k
views
GDCprepare stop working for some unknown reason
tcgabiolinks
gdcprepare
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
ansari.sarabio
• 0
0
votes
0
replies
1.2k
views
Reasoning for illegal operation
tcgabiolinks
illegaloperation
gdcprepare
7.9 years ago
lisa8191
• 0
0
votes
1
reply
2.2k
views
How to get treatment information with TCGAbiolinks?
gdcprepare
tcgabiolinks
treatment_type
R
data extraction
updated 8.4 years ago by
Dario Strbenac
★ 1.6k • written 8.4 years ago by
newbie
• 0
0
votes
3
replies
1.8k
views
TCGA controlled data
R
tcgabiolinks
gdcprepare
8.5 years ago
ugandhar.ch1
• 0
0
votes
2
replies
4.5k
views
Extract gene expression values from GDCprepare object
tcgabiolinks
tcga
tcgadownload
gdcprepare
gdc
updated 8.6 years ago by
Tiago Chedraoui Silva
▴ 260 • written 8.7 years ago by
enigmargs
• 0
0
votes
8
replies
3.4k
views
TCGAbiolinks GDCprepare fails to connect to Biomart web server
tcgabiolinks
gdcprepare
9.1 years ago
sabarinath.chandrasekharan
▴ 10
0
votes
1
reply
1.5k
views
Error during GDCprepare
tcgabiolinks
gdcprepare
updated 9.2 years ago by
Tiago C. Silva
▴ 270 • written 9.2 years ago by
Mariana Boroni
▴ 10
12 results • Page
1 of 1
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Comment: deseq2 filter the low counts
by
empty_mt
• 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions
by
Michael Love
43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed
by
shepherl
4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Comment: bake() and cool() resulting in an empty table
by
Francesc
• 0
Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…
Votes
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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