Bioconductor Gencode

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1.1k

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recount RNAseq gencode lncRNA gene annotation

updated 4.4 years ago by chris.wilks ▴ 70 • written 4.5 years ago by francesco.gandolfi ▴ 20

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5.2k

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biomart rsubread gencode

updated 4.9 years ago by James W. MacDonald 63k • written 4.9 years ago by YinCY ▴ 20

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1.4k

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bsgenome variant calling whole exome sequence gencode reference genome

updated 5.1 years ago by Hervé Pagès 16k • written 5.1 years ago by svlachavas ▴ 810

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1.4k

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deseq2 tximport org.mm.eg.db gencode

5.5 years ago pvd2107 ▴ 30

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3.0k

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AnnotationHub Gencode GFF3 FASTA News

8.1 years ago Sonali Arora ▴ 390

5 results • Page 1 of 1

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Comment: DMRcate design by Jitendra ▴ 10

Thanks James, do I also need to mention 'contrasts=FALSE' in cpg.annotate.And also what to mentions in analysis.type="differential",/ "ANO…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

I don't know the details but do you mean using `HDF5RealizationSink` or `TENxRealizationSink` will make it possible to writing sparse multi…

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Ok, I understood. How about "writing" to HDF5? Are you going to implement `write_block_as_sparse` in `SparseArray` package?

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

> So do you means the specification change from DelayedArray's read_sparse_block to SparseArray's read_block_as_sparse will accelerate the …

Comment: DelayedArray::read_sparse_block by Koki ▴ 10

Thanks for your reply. So do you means the specification change from `DelayedArray`'s `read_sparse_block` to `SparseArray`'s `read_block_a…

Votes

Answer: DMRcate design

Comment: DMRcate design

Answer: What MetaPhlAn3 database was used in cMD 3?

Comment: Speeding up of DelayedArray::write_block()

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