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GOslim
•
reset
0
votes
8
replies
1.3k
views
GOslim missing GO term
GO.db
GOslim
14 months ago
amanda
• 0
3
votes
4
replies
2.4k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase
go
gene ontology
goslim
5.0 years ago • updated 23 months ago
samwhite
▴ 20
7
votes
9
replies
4.3k
views
GSEABase - View/extract GO terms mapped to each GOslim
go
GSEABase
GOslim
gene ontology
5.0 years ago • updated 22 months ago
samwhite
▴ 20
0
votes
2
replies
1.9k
views
Resolved- GSEAbase: goSlim function, pb with counts
GSEA
GO
goSlim
7.4 years ago
maeva.mollion
• 0
1
vote
1
reply
1.5k
views
Obtaining Go slim terms from biomaRt
biomaRt
goslim
go
updated 8.3 years ago by
Mike Smith
★ 6.6k • written 8.3 years ago by
rubi
▴ 110
0
votes
0
replies
1.5k
views
Create list of genes within each GOslim term
gene ontology
goslim
enrichment analysis
gene annotation
8.8 years ago
mirko
• 0
6 results • Page
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Answer: SingleR with multiple single cell references
by
Aaron Lun
★ 28k
> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
by
ATpoint
★ 4.7k
The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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Wolfgang Huber
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