Showing : GOslim • reset
0
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8
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GOslim missing GO term
GO.db GOslim
12 months ago amanda • 0
3
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4
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2.2k
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GSEABase - Map gene/transcript IDs to GOslims?
gseabase go gene ontology goslim
4.8 years ago • updated 21 months ago samwhite ▴ 20
7
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9
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4.1k
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GSEABase - View/extract GO terms mapped to each GOslim
go GSEABase GOslim gene ontology
4.8 years ago • updated 21 months ago samwhite ▴ 20
0
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2
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1.9k
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Resolved- GSEAbase: goSlim function, pb with counts
GSEA GO goSlim
7.3 years ago maeva.mollion • 0
1
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1
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1.4k
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Obtaining Go slim terms from biomaRt
biomaRt goslim go
updated 8.1 years ago by ★ 6.6k • written 8.1 years ago by ▴ 110
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0
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1.5k
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Create list of genes within each GOslim term
gene ontology goslim enrichment analysis gene annotation
8.7 years ago mirko • 0
6 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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