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GOslim
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7
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9
replies
4.0k
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GSEABase - View/extract GO terms mapped to each GOslim
go
GSEABase
GOslim
gene ontology
4.8 years ago • updated 20 months ago
samwhite
▴ 20
0
votes
8
replies
1.2k
views
GOslim missing GO term
GO.db
GOslim
12 months ago
amanda
• 0
3
votes
4
replies
2.1k
views
GSEABase - Map gene/transcript IDs to GOslims?
gseabase
go
gene ontology
goslim
4.8 years ago • updated 21 months ago
samwhite
▴ 20
0
votes
2
replies
1.9k
views
Resolved- GSEAbase: goSlim function, pb with counts
GSEA
GO
goSlim
7.2 years ago
maeva.mollion
• 0
1
vote
1
reply
1.4k
views
Obtaining Go slim terms from biomaRt
biomaRt
goslim
go
updated 8.1 years ago by
Mike Smith
★ 6.6k • written 8.1 years ago by
rubi
▴ 110
0
votes
0
replies
1.5k
views
Create list of genes within each GOslim term
gene ontology
goslim
enrichment analysis
gene annotation
8.6 years ago
mirko
• 0
6 results • Page
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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